PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29647.m002101
Common NameRCOM_0558560
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 668aa    MW: 75006.7 Da    PI: 5.55
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29647.m002101genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14480526455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  29647.m002101 480 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 526
                    7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.7E-539186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-19478543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19480542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11480525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-14480530No hitNo description
SMARTSM003531.4E-17482531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAAPPSSRLQ NMLQAAVQSV NWTYSLFWQL CPQQGILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPLL DGVVEFGTTE KVQEDLGFVQ  180
RVKNFFSDHH HNHSHPPPPP PKPALSEHST SNPATSSDHL RFHSPPIPAT YGATNNPPTN  240
PNQDEEEEEE DEDDEEEDGS DSETETGRNN RTIAGEAQIE TAAAEPSELM QLEMSEDIRL  300
GSPDDGSNNL ESEFHLIGSR NQDLQSRVES FRAESARRWA LVHDPLSSRL QPSLPPGPPA  360
ATAPLQDMAV APQEDTHYSQ TVSTILQTQR IRWTETSSST PYVSYSSQSA FTKWTNRCSD  420
HILHTPIEGA SQWFLKYILF SVPYLHHKYR EENNSPKSRD ADAASRFRKA TAAQEELSAN  480
HVLAERRRRE KLNERFIILR SLVPFVTKMD KASILGDTIE YVKQLRKKIQ DLEARNRQME  540
NERGLRSSSE PPSHRTSSLK EQRSGVTTTM VVDRSRNEKK KLRIIEGSGG CAKSKTVETS  600
TEQEVNVEVS IIECDALLEL QCGYREGLLL DIMQMLRDLR IETTAVQSSS NNGVFLAELR  660
AKVRIMPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2291879193Transcription factor MYC3
4rqw_B1e-2291879193Transcription factor MYC3
4rs9_A1e-2291879193Transcription factor MYC3
4yz6_A1e-2291879193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1484489ERRRRE
2485490RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29647.m002101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575616.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLB9S4390.0B9S439_RICCO; Uncharacterized protein
STRINGXP_002520758.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-97bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]