PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29647.m001998

Common Name

RCOM_0555290

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

HB-other

Protein Properties

Length: 1021aa MW: 113580 Da PI: 9.7466

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29647.m001998	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.5	4.8e-08	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F ++ +s++e +e++++ g+t +qV+ +F +R + +k 29647.m001998 65 KRPRDLLNPKAIKYMQAVFSMKDAISKKECREISAQFGVTVTQVRDFFNSQRSRVRK 121 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-7	60	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.074	62	122	IPR001356	Homeobox domain
SMART	SM00389	5.7E-5	64	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-6	65	125	IPR009057	Homeodomain-like
CDD	cd00086	1.28E-5	65	121	No hit	No description
Pfam	PF00046	1.7E-5	65	121	IPR001356	Homeobox domain
Gene3D	G3DSA:1.20.930.10	2.0E-6	224	317	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	3.4E-6	225	317	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence Send to blast
MENLEEIEIG TSVVSFQKIL DSQKELFHCQ IDQLQRIVVT QCKLTGVNPL SQEMAAGAMS 60 IKIGKRPRDL LNPKAIKYMQ AVFSMKDAIS KKECREISAQ FGVTVTQVRD FFNSQRSRVR 120 KLVRLSREKV ARANSYDERQ DGVPTSSDPM VPIDMAPLNS VYPDLVNFVG SNPAPLSSVD 180 DILPGLHDQD RHFVENIFNL LRKEETFSGQ VKLMEWILQI QNPSVLNWFL TKGGVMILAT 240 WLSQAAAEEQ TSMLLVTLKV LCHLPLHKAV PEHMSAILHS VNRLRFYRTS DISNRARVLL 300 SRWSKMFARA QAMKKPNGMK SSMDPQEMIL KQSIDEIMGN ELWHPNGNNL EDVLALSESS 360 ENMRKMEPSQ TLKLLPAPTD DSSRKHILGV LSSHTRERRK VQLVEQPGQK TGGRGPQATK 420 AAPASQGRPM STDDIQKAKM RALFMQSKQG KTVSSSNGIN GMKKGGLSKL SSALSGNLSS 480 SSEVPLLPKV EETKKSVVAP QKNFKQEGPL DPIRKMDLKE PLEDLCKRVR IPWQTPPEIK 540 LNDLWRVGNG ENSKEVDVQK NRNRREIEII YRTVQDIPAN PKAPWDVEMD YDDTLTPEIP 600 IEQPPDADVA ETQVIPNEKI VNTVVTPAPT LPQINGGSAA EPDLELLAVL LKNPELVFAL 660 TSGHAGNISP QDTVKLLDMI KRSGTGLADS VNVFGGKVEE KVEVSLPSPT PSSNPGTAGW 720 RPQVVKNPFS QQNSRGKRVA YSDRPVPTTI PSMQPQNLDS NIKIPQQQAT ASPQSLSQQV 780 QSAIPRFSLP QTTSSSYIHE NQQLSMIFPS HQSLPTNSSM LHTKASEMGL PMNTPHARNF 840 LAGSSVRVET VNHVQPAQSV SYAMNTPERQ PVSSPLPPSL PITTRAHPQT HLVSDPVHVH 900 QSTGNMGSMP ESWRSRQLVA SNSVSQVNQT NYDASSFRGP AQPQVRPGPP WERNEYMGND 960 GFESWSPENS PSRSPEYMPG RNYPGPGTNP GWNYNPDNRA RQRDYNSGHR DQTRNGNRRW 1020 R

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence Send to blast

MENLEEIEIG TSVVSFQKIL DSQKELFHCQ IDQLQRIVVT QCKLTGVNPL SQEMAAGAMS  60
IKIGKRPRDL LNPKAIKYMQ AVFSMKDAIS KKECREISAQ FGVTVTQVRD FFNSQRSRVR  120
KLVRLSREKV ARANSYDERQ DGVPTSSDPM VPIDMAPLNS VYPDLVNFVG SNPAPLSSVD  180
DILPGLHDQD RHFVENIFNL LRKEETFSGQ VKLMEWILQI QNPSVLNWFL TKGGVMILAT  240
WLSQAAAEEQ TSMLLVTLKV LCHLPLHKAV PEHMSAILHS VNRLRFYRTS DISNRARVLL  300
SRWSKMFARA QAMKKPNGMK SSMDPQEMIL KQSIDEIMGN ELWHPNGNNL EDVLALSESS  360
ENMRKMEPSQ TLKLLPAPTD DSSRKHILGV LSSHTRERRK VQLVEQPGQK TGGRGPQATK  420
AAPASQGRPM STDDIQKAKM RALFMQSKQG KTVSSSNGIN GMKKGGLSKL SSALSGNLSS  480
SSEVPLLPKV EETKKSVVAP QKNFKQEGPL DPIRKMDLKE PLEDLCKRVR IPWQTPPEIK  540
LNDLWRVGNG ENSKEVDVQK NRNRREIEII YRTVQDIPAN PKAPWDVEMD YDDTLTPEIP  600
IEQPPDADVA ETQVIPNEKI VNTVVTPAPT LPQINGGSAA EPDLELLAVL LKNPELVFAL  660
TSGHAGNISP QDTVKLLDMI KRSGTGLADS VNVFGGKVEE KVEVSLPSPT PSSNPGTAGW  720
RPQVVKNPFS QQNSRGKRVA YSDRPVPTTI PSMQPQNLDS NIKIPQQQAT ASPQSLSQQV  780
QSAIPRFSLP QTTSSSYIHE NQQLSMIFPS HQSLPTNSSM LHTKASEMGL PMNTPHARNF  840
LAGSSVRVET VNHVQPAQSV SYAMNTPERQ PVSSPLPPSL PITTRAHPQT HLVSDPVHVH  900
QSTGNMGSMP ESWRSRQLVA SNSVSQVNQT NYDASSFRGP AQPQVRPGPP WERNEYMGND  960
GFESWSPENS PSRSPEYMPG RNYPGPGTNP GWNYNPDNRA RQRDYNSGHR DQTRNGNRRW  1020
R

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29647.m001998

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015575659.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	B9S3T8	0.0	B9S3T8_RICCO; Homeobox protein LUMINIDEPENDENS, putative
STRING	XP_002520657.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-180	HB-other family protein

Link Out ? help Back to Top
Phytozome	29647.m001998

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]