PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29646.m001118

Common Name

RCOM_0554450

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

VOZ

Protein Properties

Length: 398aa MW: 43743.8 Da PI: 4.7097

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29646.m001118	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	116.6	2.6e-36	214	283	1	70
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakv 70 p+psaf+gpkcalwdc+rpaqgsew++dycssfhatlalneg+pg tpvlrp gi+lkd+llf al+a+ 29646.m001118 214 PAPSAFMGPKCALWDCARPAQGSEWFEDYCSSFHATLALNEGPPGKTPVLRPSGIGLKDNLLFTALNARH 283 89****************************************************************9975 PP
2	VOZ	106.5	3.1e-33	285	349	153	217
VOZ 153 rsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 rsyymdpqp++++ whlyeyei+++da+alyrlelk vdekk++kgkv+kdsladlqkk+grlta 29646.m001118 285 RSYYMDPQPPGCYGWHLYEYEISNSDACALYRLELKFVDEKKTPKGKVMKDSLADLQKKMGRLTA 349 9**************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MMMKCLITGF LGKMQKGTKS KCASVSHNLL LDNAKNRLND LQERFSNLQA ARMEGRASDV 60 AVLEEQVYQS LREWKAELDA PSPASSLVGG SLGTFSEDIG RLLQLCEEEE DDATSPLVEQ 120 SVLKPEPNIQ SVNIGNFTAF EDDYFRNSDT QVHSFQGFDQ CNNSLTLQNT VVSTSDMTAF 180 LDYQQFISDE GFDLLGTNDS KEFTGSVAIL PIGPAPSAFM GPKCALWDCA RPAQGSEWFE 240 DYCSSFHATL ALNEGPPGKT PVLRPSGIGL KDNLLFTALN ARHGRSYYMD PQPPGCYGWH 300 LYEYEISNSD ACALYRLELK FVDEKKTPKG KVMKDSLADL QKKMGRLTAD NTGDNSPSSK 360 TRTRTDKKTE AGGDDLTPDQ KSSDAKALGH DSIQSSSK

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MMMKCLITGF LGKMQKGTKS KCASVSHNLL LDNAKNRLND LQERFSNLQA ARMEGRASDV  60
AVLEEQVYQS LREWKAELDA PSPASSLVGG SLGTFSEDIG RLLQLCEEEE DDATSPLVEQ  120
SVLKPEPNIQ SVNIGNFTAF EDDYFRNSDT QVHSFQGFDQ CNNSLTLQNT VVSTSDMTAF  180
LDYQQFISDE GFDLLGTNDS KEFTGSVAIL PIGPAPSAFM GPKCALWDCA RPAQGSEWFE  240
DYCSSFHATL ALNEGPPGKT PVLRPSGIGL KDNLLFTALN ARHGRSYYMD PQPPGCYGWH  300
LYEYEISNSD ACALYRLELK FVDEKKTPKG KVMKDSLADL QKKMGRLTAD NTGDNSPSSK  360
TRTRTDKKTE AGGDDLTPDQ KSSDAKALGH DSIQSSSK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29646.m001118

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015578401.2	0.0	LOW QUALITY PROTEIN: transcription factor VOZ1
Swissprot	Q9SGQ0	4e-76	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	B9SGN7	0.0	B9SGN7_RICCO; Uncharacterized protein
STRING	XP_002525156.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	3e-78	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	29646.m001118

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]