PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29646.m001101 | ||||||||
Common Name | LOC8264224, RCOM_0554080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | TCP | ||||||||
Protein Properties | Length: 349aa MW: 38277.8 Da PI: 6.9781 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.7 | 5.2e-35 | 20 | 147 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssasec 73 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + 29646.m001101 20 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwhptandtnvameadhnaggtsE------- 108 79**************************************************************7766554433333333332222220....... PP TCP 74 eaesssssasnsssg.....................................k 89 + 29646.m001101 109 --------------MaigeqsessgysfqlhrqlgesnpsndssfmtptidpD 147 ..............023222222222222222233333333333444444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.5E-31 | 20 | 135 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.172 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MKGSGGEIVQ VQGGHIVRST GRKDRHSKVY TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD 60 RPSKAVDWLI KKAKSAIDKL AELPPWHPTA NDTNVAMEAD HNAGGTSEMA IGEQSESSGY 120 SFQLHRQLGE SNPSNDSSFM TPTIDPDAIP DTMKSLFPTS STNSTMNFQS YPSDIISRTT 180 NHTEDLGLSL HSFQDQGLIH GQSAQADTRH TASNNQNLFA SSPYEANFQR MVGWSNSSTS 240 TDNRGGGGFS FNQPPMTTQQ ALLGQDSAFS QRGTLQSSFA QSIRAWNDLN MASSNHHRPQ 300 EIHQSFIFGS RFAPEGLAGF NIPARIHGEE EHSVVSDRPS SSSPNSQHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29646.m001101 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525139.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_025014201.1 | 0.0 | transcription factor TCP4 | ||||
TrEMBL | B9SGM0 | 0.0 | B9SGM0_RICCO; Transcription factor, putative | ||||
STRING | XP_002525139.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 3e-76 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 29646.m001101 |
Entrez Gene | 8264224 |