PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29646.m001101
Common NameLOC8264224, RCOM_0554080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 349aa    MW: 38277.8 Da    PI: 6.9781
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29646.m001101genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.75.2e-3520147289
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssasec 73 
                    +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++                        +       
  29646.m001101  20 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwhptandtnvameadhnaggtsE------- 108
                    79**************************************************************7766554433333333332222220....... PP

            TCP  74 eaesssssasnsssg.....................................k 89 
                                                                        +
  29646.m001101 109 --------------MaigeqsessgysfqlhrqlgesnpsndssfmtptidpD 147
                    ..............023222222222222222233333333333444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3120135IPR005333Transcription factor, TCP
PROSITE profilePS5136933.1722280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MKGSGGEIVQ VQGGHIVRST GRKDRHSKVY TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD  60
RPSKAVDWLI KKAKSAIDKL AELPPWHPTA NDTNVAMEAD HNAGGTSEMA IGEQSESSGY  120
SFQLHRQLGE SNPSNDSSFM TPTIDPDAIP DTMKSLFPTS STNSTMNFQS YPSDIISRTT  180
NHTEDLGLSL HSFQDQGLIH GQSAQADTRH TASNNQNLFA SSPYEANFQR MVGWSNSSTS  240
TDNRGGGGFS FNQPPMTTQQ ALLGQDSAFS QRGTLQSSFA QSIRAWNDLN MASSNHHRPQ  300
EIHQSFIFGS RFAPEGLAGF NIPARIHGEE EHSVVSDRPS SSSPNSQHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-222780154Putative transcription factor PCF6
5zkt_B1e-222780154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29646.m001101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525139.10.0transcription factor TCP4
RefseqXP_025014201.10.0transcription factor TCP4
TrEMBLB9SGM00.0B9SGM0_RICCO; Transcription factor, putative
STRINGXP_002525139.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.13e-76TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3