PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29646.m001100 | ||||||||
Common Name | LOC8264223, RCOM_0553970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | TCP | ||||||||
Protein Properties | Length: 409aa MW: 45867.5 Da PI: 6.6814 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.2 | 7.2e-35 | 95 | 197 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg.... 88 +g+kdrhsk++T++g+RdRRvRlsa++a+ f+d+qd+LG+d++sk+++WL+++ak ai++l ++ + a++++++++ ++ + + 29646.m001100 95 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIDFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDELppwhpT---ANDTNEAMETDQNVE---Ptemp 184 79**************************************************************764431...333322222222211...12223 PP TCP 89 ............k 89 + 29646.m001100 185 igeqlessgytfQ 197 4333322233330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-30 | 95 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.948 | 97 | 155 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MRNLDFQINQ QQQLQNPVYR ETQQQNLDIQ QPLHQQHRHL LQNNQEYGEA LNLSQAEVEP 60 SRQSLQFTKS RQRTGMKGAV GEIVQAQGGH ILRSTGRKDR HSKVCTAKGP RDRRVRLSAH 120 TAIDFYDVQD RLGYDRPSKA VDWLIKKAKS AIDKLDELPP WHPTANDTNE AMETDQNVEP 180 TEMPIGEQLE SSGYTFQPHK SNYSSFVSPT IDPDALNDTM KSLFPTSSAN SSMHFQSYPP 240 DIISRTINHT EDLGLSLHSF QNQSLIHGQS QAGTSHTPSD ELASAQVEYE PNLIGWSNNT 300 SARSRAGGAF SFNPLPIPLQ QAMFSQNSAL SQRGSLQSNF SQSMHTWNDL TMSSPDHHRT 360 QVIHQPFIFG SRFAPEALAG HSIPAQIHGQ EEQRFVSDMP SSASPNSQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 102 | 155 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 102 | 155 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29646.m001100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525138.1 | 0.0 | transcription factor TCP4 | ||||
TrEMBL | B9SGL9 | 0.0 | B9SGL9_RICCO; Transcription factor, putative | ||||
STRING | XP_002525138.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-68 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 29646.m001100 |
Entrez Gene | 8264223 |