PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29646.m001078

Common Name

LOC8264201, RCOM_0553450

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 265aa MW: 29291.7 Da PI: 7.5039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29646.m001078	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.7	2.4e-14	72	118	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+Er+RR+riN +++Lr+l+P a kK++Ka+ L ++++Y+k+L 29646.m001078 72 RNHCEAERKRRARINAHLDTLRSLVPGA-----KKMDKASLLAEVIKYMKEL 118 57***********************9.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.034	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-12	72	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-15	72	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.81E-13	72	119	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-14	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-12	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.1E-4	155	201	No hit	No description
CDD	cd04873	8.35E-5	156	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEHHSLSSNL CTDLEGFSDE VFMNTDFEAK IRNGLCSTSS LVLDSQRGEL VEATVSVGKK 60 GVSAERSTQA LRNHCEAERK RRARINAHLD TLRSLVPGAK KMDKASLLAE VIKYMKELKM 120 TAAGVSEGLL MPMDVDEVRV EGQDDKVDGA PCMIRISLCC DYKPGLLSDL RRALDALHLI 180 VMRSEIATLE GRMKNVLVMT SCKEAHSGCT EVHKLLACSV QQAIRSILDK FSASHELSLK 240 STLSHKRQRV SLFDPHFSSS SGDIW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29646.m001078

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525116.1	0.0	putative transcription factor bHLH107
TrEMBL	B9SGJ7	0.0	B9SGJ7_RICCO; Uncharacterized protein
STRING	XP_002525116.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10685	25	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	1e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	29646.m001078
Entrez Gene	8264201