PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29646.m001070
Common NameLOC8264193, RCOM_0553270
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 539aa    MW: 60899.1 Da    PI: 6.4637
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29646.m001070genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.21.4e-891715381374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    l++ L+++A++++s++ +la+ +L rl+++ +sp g+p+qR+a++f+eAL++ la+     +   p+ +ts+++++++++a++ fs +sPi+ f h
  29646.m001070 171 LIQELIRAADCIDSSEIQLANVILDRLNHRlQSPVGKPLQRAAFFFKEALQNLLAG-----SPRTPTHPTSWSEVVQTIKAYQDFSGISPIPMFNH 261
                    6899*************************99*************************.....6677899999999********************** PP

           GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                    +   qaIle ++ +   +H+iDfdi+ G Q+++++++L  +++       +p lRiT+v+ +  + + +++ +++ L+++A el+++f++++++++
  29646.m001070 262 FPVDQAILETLDDSpPFIHVIDFDIGLGCQYASFMRELVGKTDHfcnkltSPVLRITAVVTE--DYAIQTQLIKQCLSQYALELKIRFQIEFVLTR 355
                    **************99***********************999544555669**********5..599999************************** PP

           GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpre 278
                    ++e+++++++++ +gE++a+ l+ + +r l   +s+++++++++  ++++sP+vvvvv++e   + + +sF + f++ le+ys++f+sl+a ++  
  29646.m001070 356 TFEMVSFKSIKFIEGEKIAILLSSATFRRL---GSSNNNINSFVTDIRRVSPEVVVVVDNEgwGESEPASFRRNFVNGLEFYSMIFESLDAAAAGG 448
                    *****************************9...66666677********************65566778***********************9999 PP

           GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+++k+E +ll+++i  +v   g++          Wre +  aG++ +p+s++   qa++ll kv+++g+ v +++++lvl+W++rpL+++S+W+
  29646.m001070 449 GEWARKIEMFLLKPRIFAAVEGCGRR------VSPPWREVFCGAGMRVMPFSQFSDFQAESLLGKVQVRGFYVAKRQAELVLCWHERPLIATSVWK 538
                    9*******************999987......789************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.906145518IPR005202Transcription factor GRAS
PfamPF035144.8E-87171538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MKVPVSSSQN NNHRQSQSAN LKNSTNSRNI GFHNSSSAPN LCYEPTSVLD LRRSPSPVSG  60
KPASGPEHHH SLEWDEHVLQ NFDWDFIMKE LDFHEDSTPT LKNIPQVNSC ESIIHSHNNL  120
QEFTAPSNND PPHLLHHPDF NDICFNIPTQ KLNSLDLSHN IGNWSNFGFD LIQELIRAAD  180
CIDSSEIQLA NVILDRLNHR LQSPVGKPLQ RAAFFFKEAL QNLLAGSPRT PTHPTSWSEV  240
VQTIKAYQDF SGISPIPMFN HFPVDQAILE TLDDSPPFIH VIDFDIGLGC QYASFMRELV  300
GKTDHFCNKL TSPVLRITAV VTEDYAIQTQ LIKQCLSQYA LELKIRFQIE FVLTRTFEMV  360
SFKSIKFIEG EKIAILLSSA TFRRLGSSNN NINSFVTDIR RVSPEVVVVV DNEGWGESEP  420
ASFRRNFVNG LEFYSMIFES LDAAAAGGGE WARKIEMFLL KPRIFAAVEG CGRRVSPPWR  480
EVFCGAGMRV MPFSQFSDFQ AESLLGKVQV RGFYVAKRQA ELVLCWHERP LIATSVWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2317753725378Protein SCARECROW
5b3h_A9e-2417753724377Protein SCARECROW
5b3h_D9e-2417753724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29646.m001070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525108.10.0scarecrow-like protein 15
SwissprotO232101e-157SCL15_ARATH; Scarecrow-like protein 15
TrEMBLB9SGI90.0B9SGI9_RICCO; DELLA protein GAIP-B, putative
STRINGXP_002525108.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-156GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]