PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29646.m001068
Common NameLOC8264191, RCOM_0553250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 350aa    MW: 37193.7 Da    PI: 5.4824
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29646.m001068genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.19.3e-24251313163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++ N+ L++el++l++e++klkse+
  29646.m001068 251 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLTTDNRNLRDELQRLSEECDKLKSEN 313
                    89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.6E-30192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1701.3E-19245311No hitNo description
SMARTSM003387.4E-22251315IPR004827Basic-leucine zipper domain
PfamPF001701.1E-21251313IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.426253316IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-12254311No hitNo description
CDDcd147023.61E-25256307No hitNo description
PROSITE patternPS000360258273IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGTGEESTPA KPSKPSSAQE IPPTPAYPDW SNSMQAYYGA GATPPFFAST VPSPTPHPYL  60
WGGQHPLMPP YGTPVPYPAL YPAGGVYAHP NMATPPNPAQ ANTEYEGKGP DGREKASVKK  120
SKGNVVGKAG ESAKATSGSG NDGASQSAES GSDGSSDASD ENNNHQDFAA NKKGSFDQML  180
ADANAQNNTA GASVPGKPVV SMPATNLNIG MDLWNASPAA APGATKIRPN ASGGSSGIVP  240
AIMPEQWIQD ERELKRQKRK QSNRESARRS RLRKQAECEE LQARVETLTT DNRNLRDELQ  300
RLSEECDKLK SENDSIKEEL TRLYGPDAVA NLEQSNHSSV VQFRGDEGNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273RRSRLRK
2267274RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29646.m001068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525106.10.0G-box-binding factor 1
RefseqXP_015578440.10.0G-box-binding factor 1
RefseqXP_015578442.10.0G-box-binding factor 1
RefseqXP_025014196.10.0G-box-binding factor 1
SwissprotP427741e-121GBF1_ARATH; G-box-binding factor 1
TrEMBLB9SGI70.0B9SGI7_RICCO; G-box-binding factor, putative
STRINGXP_002525106.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-104G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]