PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29643.m000337 | ||||||||
Common Name | LOC8279899, RCOM_0550250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NF-YC | ||||||||
Protein Properties | Length: 232aa MW: 26520.3 Da PI: 10.5179 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41.6 | 2.8e-13 | 117 | 207 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +i+++++ ++P+arik+i+k+++ ++++ ++ l+ ka e+f+ ++ ++ a + ++l ++++v+ fdfl d vp++ 29643.m000337 117 DIGESENGTMCSFPMARIKRIIKTEDIGSKLTQDVVFLVNKATEMFLEQFCEEAYECAVREENESLAYKHLSSVVSGQRRFDFLSDFVPKQ 207 566677777889*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.2E-16 | 127 | 208 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-15 | 128 | 191 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.9E-22 | 129 | 206 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MASTKISKKE GEKKKKKKNA KESPGKTRKT PIKRTPSKLP KKQEDKKNNS NKTPSGKVKE 60 SPEDSIISFS SSDSLQEVQE AVTKKELAKN SKPKNQSSNN RSPKIEKSKK RKIKEDDIGE 120 SENGTMCSFP MARIKRIIKT EDIGSKLTQD VVFLVNKATE MFLEQFCEEA YECAVREENE 180 SLAYKHLSSV VSGQRRFDFL SDFVPKQLKA KEALRRRTLV ETVQRQEQYL SR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 111 | PKIEKSKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29643.m000337 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002532613.2 | 1e-166 | uncharacterized protein LOC8279899 | ||||
TrEMBL | B9T2Z4 | 1e-165 | B9T2Z4_RICCO; DNA polymerase epsilon subunit, putative | ||||
STRING | XP_002532613.1 | 1e-166 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 4e-31 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | 29643.m000337 |
Entrez Gene | 8279899 |