PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29634.m002128
Common NameRCOM_0536100
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 333aa    MW: 37142.1 Da    PI: 8.8953
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29634.m002128genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.21.4e-31122177359
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                    +vrY+eClkNhAas+Gg  vDGCgEfmps g+egt +a+kCaAC+CHRnFHR+e + 
  29634.m002128 122 SVRYRECLKNHAASTGGLIVDGCGEFMPS-GQEGTLEAMKCAACECHRNFHRKEIHG 177
                    69**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.4E-30123175IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-21123175IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.8E-29124175IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.118125174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.11E-17256330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-27259331IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-25269326IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEVRSQDKEI GMPSSLDCNP PKRDSSSKFP PMISALGERT TDHQPAISQT HEQHHPLYDQ  60
PKMNLHQQSL KPIRDLDLIP DPAPAPAPAT GATNRPPVPS SRSMSRSPPP ASAITTTASA  120
PSVRYRECLK NHAASTGGLI VDGCGEFMPS GQEGTLEAMK CAACECHRNF HRKEIHGESQ  180
CAANCYCKNN SQRNNTVPPP YHHLSHSLAS AQPPIHQRRT FPHGFSSAVL TAPVLMTFGS  240
GGAAAESSSE DLDMFQPNSQ GHGCMQQLKK RYRTKFSQEQ KDKMMEFAER LEWKIQKQDD  300
QEVQQFCTRV GVKRRVFMVW MHNNKQAMKK KQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202703271875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29634.m002128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576280.10.0zinc-finger homeodomain protein 6
TrEMBLB9S6F40.0B9S6F4_RICCO; Transcription factor, putative
STRINGXP_002521573.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.14e-57homeobox protein 24