PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29634.m002076
Common NameLOC8279135, RCOM_0534170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 151aa    MW: 17278.4 Da    PI: 6.1054
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29634.m002076genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-103470541
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                   ++ +r+ +NRe+A rsR RK++ ++ L     +L++e
  29634.m002076 34 RKRKRMVSNRESAHRSRMRKQKHMDDLMVQLGQLKKE 70
                   678999***********************99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-93094IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.2E-1032113No hitNo description
PROSITE profilePS502178.7953274IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.54E-113487No hitNo description
PfamPF001701.1E-83470IPR004827Basic-leucine zipper domain
CDDcd147022.85E-153585No hitNo description
PROSITE patternPS0003603752IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MATSSGASSG SSSLLPNSSS EDDLQQQKQI MDQRKRKRMV SNRESAHRSR MRKQKHMDDL  60
MVQLGQLKKE SIEIFSSFNI TSQLYLNLEG ENSVLRAQVT ELTNRLDSLS EIINYMNLSN  120
GFFEGGDHGQ MIDDYFFHAN QNQPIMDMAM Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13354RKRKRMVSNRESAHRSRMRKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29634.m002076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521521.11e-108bZIP transcription factor 44
SwissprotC0Z2L56e-37BZP44_ARATH; bZIP transcription factor 44
TrEMBLB9S6A21e-106B9S6A2_RICCO; Ocs element-binding factor, putative
STRINGXP_002521521.11e-107(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.15e-35G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]