PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29633.m000898

Common Name

LOC8260321, RCOM_0530880

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 367aa MW: 41420.4 Da PI: 8.4562

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29633.m000898	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.7e-24	114	199	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA GFs+rk+ +ks+ ng +++r+++C+k+g+r ++ + k r++r+etrtgC a++++ ++ +gk++vt+++++HnHe+ 29633.m000898 114 CYSRYAVLQGFSIRKDFVNKSRLNGDVVSRRYTCYKQGYRPANHIA--KVRKPRQETRTGCLAQMTIARQPNGKFRVTRFVTQHNHEF 199 7***************************************9988..99**********************************98 PP
2	FAR1	92.9	4.1e-29	248	336	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+r+etr+gC+a+l+++++ d+k++vt++e++HnHel+ 29633.m000898 248 EFYNAYAGQVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-LNVKRPRKETRIGCTAQLVISRQPDSKYRVTHFEKKHNHELV 336 6*****************************************999.9999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-22	114	199	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.0E-26	248	336	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGSCELGNTS SYVQKEVLED KLQASPAVET TVEQDHQVVE SDLDFQSSED GSCNDGSGVE 60 VDGGSSDSPK YSSVNICGQS LPEADVGLKN EEEETYVAPK VGMEFETEDH AYKCYSRYAV 120 LQGFSIRKDF VNKSRLNGDV VSRRYTCYKQ GYRPANHIAK VRKPRQETRT GCLAQMTIAR 180 QPNGKFRVTR FVTQHNHEFL APSTAHMLPS QKRLTFAQAV EADLAKDFVM DGVPKLGMGF 240 ESEDHAYEFY NAYAGQVGFS VRKDYVNRSK IDGAVASRRF TCFREGFRQK DKRDLNVKRP 300 RKETRIGCTA QLVISRQPDS KYRVTHFEKK HNHELVAVCK VRTLRSQKRL ATAQVEGNEV 360 DVHSRSL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGSCELGNTS SYVQKEVLED KLQASPAVET TVEQDHQVVE SDLDFQSSED GSCNDGSGVE  60
VDGGSSDSPK YSSVNICGQS LPEADVGLKN EEEETYVAPK VGMEFETEDH AYKCYSRYAV  120
LQGFSIRKDF VNKSRLNGDV VSRRYTCYKQ GYRPANHIAK VRKPRQETRT GCLAQMTIAR  180
QPNGKFRVTR FVTQHNHEFL APSTAHMLPS QKRLTFAQAV EADLAKDFVM DGVPKLGMGF  240
ESEDHAYEFY NAYAGQVGFS VRKDYVNRSK IDGAVASRRF TCFREGFRQK DKRDLNVKRP  300
RKETRIGCTA QLVISRQPDS KYRVTHFEKK HNHELVAVCK VRTLRSQKRL ATAQVEGNEV  360
DVHSRSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29633.m000898

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015579506.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	B9SLR8	0.0	B9SLR8_RICCO; Uncharacterized protein
STRING	XP_002526937.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-31	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	29633.m000898
Entrez Gene	8260321