PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29630.m000789

Common Name

RCOM_0524490

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 267aa MW: 30102 Da PI: 6.1048

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29630.m000789	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.4e-31	77	173	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++ k ++k+rr r+ tr gCka ++v+++++gkw+v+k+e++HnHe+ 29630.m000789 77 NFYNSYAKQMGFSIRVNTYYRSKKDNSIISREFCCSKEGFRREKHAKtvesggdETKRRRARPITREGCKALMTVRRRDNGKWHVAKVENNHNHEM 172 6*****************************************9999*999999**********************************9 PP FAR1 90 a 90 + 29630.m000789 173 V 173 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-28	77	173	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDHAPSIEAK ELVDCYGGLE EEGDEYCVVE DVDAPIVLDD TNKDDDNVNV EFSQSLNGGI 60 MEPALGMEFA SEDDARNFYN SYAKQMGFSI RVNTYYRSKK DNSIISREFC CSKEGFRREK 120 HAKTVESGGD ETKRRRARPI TREGCKALMT VRRRDNGKWH VAKVENNHNH EMVTPAMRHF 180 LRLHKEEFDR KNSLSNSFSS CGGIGLDACA SVDSNHVGNT AFSSQNCVNY IGRGRLSTFG 240 VDAQSLLGFF KVMQASDRAF YYAIQXX

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29630.m000789

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014362.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9SJB2	0.0	B9SJB2_RICCO; Uncharacterized protein
STRING	XP_002526081.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19680	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-34	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	29630.m000789