PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29610.m000410
Common NameLOC8287270, RCOM_0498800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 288aa    MW: 33240.2 Da    PI: 9.3051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29610.m000410genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-092267346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT eE +++ +a + +  +   +W+++a++++ g+t ++++  ++ 
    29610.m000410 22 EWTREENKQFERALAIYDEHepdRWRKVAAMIP-GKTVYDVIKQYRE 67
                     7*****************99*************.********99986 PP
2Myb_DNA-binding39.51.3e-12123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
    29610.m000410 123 PWTEDEHRRFLLGLLKHGKGDWRNISRNFVVSKTPTQVASHAQKY 167
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.5421871IPR017884SANT domain
SMARTSM007178.8E-91971IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-42168IPR009057Homeodomain-like
SuperFamilySSF466898.97E-122175IPR009057Homeodomain-like
CDDcd001673.84E-82268No hitNo description
PfamPF002491.2E-72267IPR001005SANT/Myb domain
PROSITE profilePS5129418.579116172IPR017930Myb domain
SuperFamilySSF466891.15E-15117172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17119171IPR006447Myb domain, plants
SMARTSM007175.3E-10120170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9120166IPR009057Homeodomain-like
CDDcd001671.02E-7123168No hitNo description
PfamPF002495.6E-10123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
METLYPSLYY MSNSDWYSQS TEWTREENKQ FERALAIYDE HEPDRWRKVA AMIPGKTVYD  60
VIKQYRELED DVSDIEAGKV PIPGYNCSSS FTLELVDNRN FDEYRKRPLA TKSGDQERKK  120
GVPWTEDEHR RFLLGLLKHG KGDWRNISRN FVVSKTPTQV ASHAQKYFIR QQLSGVKDKR  180
RPSIHDITTF NLTNANISEG NKPSSLDQSN TILSQQKSTS AMQKMLIDWK HSKNGSYMLL  240
DQTHGNFIVS SPNEVASTGL KHQGQHLYAG SVHINPHNLV FHRHQILG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-15231121193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29610.m000410
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530418.10.0transcription factor DIVARICATA
SwissprotQ8S9H75e-91DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9SWP90.0B9SWP9_RICCO; DNA binding protein, putative
STRINGXP_002530418.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.12e-92MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]