PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29596.m000699
Common NameLOC8280333, RCOM_0482400
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 30281.5 Da    PI: 9.8836
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29596.m000699genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-271059251
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly++ss
  29596.m000699 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSS 59
                   8***********************************************96 PP
2K-box89.27.9e-3079170798
          K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                    + +  ++ + +q+e+a L+++++nLq+++R+++Ge+L+ Ls+keLq+Le +Le sl+ +R kK++ll+++ieel +k + +++en +L kk+
  29596.m000699  79 TGNPISEVKFWQREAAMLRQQLQNLQENHRQMMGEELSGLSIKELQNLEGRLEMSLRGVRMKKDQLLMDEIEELNRKGNLIHQENVELYKKV 170
                    33677889*********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.567161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-32277IPR002100Transcription factor, MADS-box
CDDcd002653.94E-45274No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.9E-2884170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.16586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVVIFSS TGKLYDFSSS  60
SMKSIIERYN KSKEENNQTG NPISEVKFWQ REAAMLRQQL QNLQENHRQM MGEELSGLSI  120
KELQNLEGRL EMSLRGVRMK KDQLLMDEIE ELNRKGNLIH QENVELYKKV NLIRQENTEL  180
YKKVYGTGNT NAANRDYLST NGLGIGEEPN VPVHLQLSQP QQQNYDPPAR TTKLGYNPPH  240
NKYFHFIYQL FSHHLDAKPL FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19174174MEF2C
5f28_B7e-19174174MEF2C
5f28_C7e-19174174MEF2C
5f28_D7e-19174174MEF2C
6bz1_A7e-19183183MEF2 CHIMERA
6bz1_B7e-19183183MEF2 CHIMERA
6bz1_C7e-19183183MEF2 CHIMERA
6bz1_D7e-19183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29596.m000699
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527350.10.0MADS-box transcription factor 23 isoform X1
SwissprotA2RVQ51e-112AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLB9SMY10.0B9SMY1_RICCO; Mads box protein, putative
STRINGXP_002527350.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-115AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]