PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29596.m000688

Common Name

LOC8280322, RCOM_0481980

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 349aa MW: 39671.6 Da PI: 4.5974

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29596.m000688	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7e-12	186	229	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L 29596.m000688 186 LMAERRRRKRLNDRLAMLRSIVPKiS------KMDRTSILGDTIDYVKEL 229 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.351	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-16	183	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	186	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-12	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-4	187	241	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-15	187	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00115	275	338	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEINRQQGFL EEFLSLRRDN LETIPSFPSE IGEMFSNGWN FSCFDEFDGI NSVASTLFAP 60 NSFYQEFSSS PLEHQDFSHY YFNEVSCPFG DPPFTDDFSA PQFTDSSYNN LDTPPFPVQE 120 GHTPMSLMEN DQETGLLPNH VQISEMQAAC KFEPSQSPEV PVFSIGACPE RKIRSKKLEG 180 QPSKNLMAER RRRKRLNDRL AMLRSIVPKI SKMDRTSILG DTIDYVKELL ERINSLQQEL 240 EMGSNQLNIL KDTKASEFIV RNSPKFHVER RNEDTQIEIC CASKPGLLLS TVTALEALGL 300 EIQQCVISCF NDFSIQASCS EELEQRKMTN SEDIKQALFR SAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEINRQQGFL EEFLSLRRDN LETIPSFPSE IGEMFSNGWN FSCFDEFDGI NSVASTLFAP  60
NSFYQEFSSS PLEHQDFSHY YFNEVSCPFG DPPFTDDFSA PQFTDSSYNN LDTPPFPVQE  120
GHTPMSLMEN DQETGLLPNH VQISEMQAAC KFEPSQSPEV PVFSIGACPE RKIRSKKLEG  180
QPSKNLMAER RRRKRLNDRL AMLRSIVPKI SKMDRTSILG DTIDYVKELL ERINSLQQEL  240
EMGSNQLNIL KDTKASEFIV RNSPKFHVER RNEDTQIEIC CASKPGLLLS TVTALEALGL  300
EIQQCVISCF NDFSIQASCS EELEQRKMTN SEDIKQALFR SAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	195	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29596.m000688

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002527339.1	0.0	transcription factor bHLH93
Swissprot	Q9LSL1	2e-82	BH093_ARATH; Transcription factor bHLH93
TrEMBL	B9SMX0	0.0	B9SMX0_RICCO; DNA binding protein, putative
STRING	XP_002527339.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-84	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	29596.m000688
Entrez Gene	8280322

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]