PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29586.m000615 | ||||||||
Common Name | LOC8265025, RCOM_0467650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | NF-YC | ||||||||
Protein Properties | Length: 237aa MW: 27098.9 Da PI: 5.6068 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 126.5 | 1e-39 | 72 | 175 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif.dfl 92 l++fw++q i++ + fk nh+lPlarik+i+k+ +vkmis ++Pvl++kacelfi eltlrswl++e +krrtl+++dia a+++ i +fl 29586.m000615 72 LQMFWNQQlldIQNISTFKnNHQLPLARIKRIMKSGGEVKMISGDTPVLFAKACELFISELTLRSWLQTEGCKRRTLQRCDIARAIKHDPILqKFL 167 89******9888999999988******************************************************************9887637** PP NF-YC 93 vdivprde 100 +d +p d+ 29586.m000615 168 LDSIPYDH 175 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.21E-26 | 50 | 160 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.3E-31 | 90 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-16 | 94 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKRSLGRSLE EGAQPGMDLN QSIEFNSSSA TSPPVHNFMP MSSFMLPHHR PVEEECQKAW 60 NSRSMQGEKH NLQMFWNQQL LDIQNISTFK NNHQLPLARI KRIMKSGGEV KMISGDTPVL 120 FAKACELFIS ELTLRSWLQT EGCKRRTLQR CDIARAIKHD PILQKFLLDS IPYDHCKADE 180 IEKCDEEVEP LPPVEGPLPM IDINEDFVLT NHETPEESMM RPSLSSSAEF NYETGPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-28 | 79 | 172 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29586.m000615 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528069.1 | 1e-178 | nuclear transcription factor Y subunit C-10 | ||||
TrEMBL | B9SQ00 | 1e-177 | B9SQ00_RICCO; Ccaat-binding transcription factor, putative | ||||
STRING | XP_002528069.1 | 1e-177 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14399 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-36 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | 29586.m000615 |
Entrez Gene | 8265025 |