PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29585.m000597 | ||||||||
Common Name | RCOM_0465420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 137aa MW: 15450.7 Da PI: 10.309 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.5 | 1.3e-14 | 52 | 127 | 13 | 93 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++l++p +f+++h++ ++ ++ +++W vkl++ ++ + ++++GW+ F+k+n Lk+g F+l++r+e + 29585.m000597 52 ENILSVPFSFVQSHMEC---ETHTVMLKVANKTWPVKLNVYSRKHTAIFSAGWSAFAKQNSLKVGSAYNFELIKRDEM--T 127 4889**********744...44456666789*******5555555599************************986433..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-16 | 38 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-18 | 39 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.912 | 40 | 134 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.72E-13 | 43 | 131 | No hit | No description |
SMART | SM01019 | 4.4E-9 | 45 | 137 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-11 | 52 | 127 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MASQEGREML DKKGISRQAK KPSSFSTCQA PDSANNFISS NYPSFRAVFR HENILSVPFS 60 FVQSHMECET HTVMLKVANK TWPVKLNVYS RKHTAIFSAG WSAFAKQNSL KVGSAYNFEL 120 IKRDEMTVSK FTTCKLG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29585.m000597 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015580399.1 | 4e-92 | B3 domain-containing protein At5g18000 | ||||
TrEMBL | B9SR36 | 2e-98 | B9SR36_RICCO; Uncharacterized protein | ||||
STRING | XP_002528455.1 | 3e-99 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 4e-09 | VERDANDI |
Link Out ? help Back to Top | |
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Phytozome | 29585.m000597 |