PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29585.m000596
Common NameRCOM_0465210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 318aa    MW: 35905.7 Da    PI: 6.6399
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29585.m000596genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.2e-1256536100
                    EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
             B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    ++le + g +W+v+l    ++g+++l+kGW+e ++   L+ g f+vFk++++s f  +v +f+ks
  29585.m000596   5 VILEVPGGAVWKVEL--LECDGEVWLEKGWRELAEHYSLEYGHFLVFKYEENSHF--HVLIFDKS 65 
                    789999*********..********************************999999..*****985 PP
2B351.42e-16215295287
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    fkv ++ ++++++++ +p +f+++h + k+e+++l+      r W vkl  r +s ++ + +GW+ F ++n Lk+gD++vF+l+++
  29585.m000596 215 FKVIVRQYHFRHSNVKMPYRFFTSHIERKAENIMLQ---VADRMWPVKL--RERSHTVEINGGWSAFSRSNSLKAGDVCVFELIKS 295
                    69999********************66666664444...456*******..*******************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.07165IPR003340B3 DNA binding domain
SMARTSM010190.011165IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-16466IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16574IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-9564IPR003340B3 DNA binding domain
CDDcd100173.68E-13563No hitNo description
Gene3DG3DSA:2.40.330.101.3E-19208298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17209296IPR015300DNA-binding pseudobarrel domain
CDDcd100175.88E-14213296No hitNo description
PROSITE profilePS5086312.548214312IPR003340B3 DNA binding domain
SMARTSM010191.4E-9214309IPR003340B3 DNA binding domain
PfamPF023621.4E-13215295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSPVILEVP GGAVWKVELL ECDGEVWLEK GWRELAEHYS LEYGHFLVFK YEENSHFHVL  60
IFDKSGSEIE YPCNSIFNYM AEPNHDGELQ NHKGGNADDS SIKMLDALSS CQKMGDKFPF  120
LQSCQMRTDS NMSEKLSWSS IHACITTNTP ISTFGPQSSF IKLEKSDSSL QELGGKCARK  180
MCIGSACEQA TSLSSLHTSW ALEAANNFPS KYPSFKVIVR QYHFRHSNVK MPYRFFTSHI  240
ERKAENIMLQ VADRMWPVKL RERSHTVEIN GGWSAFSRSN SLKAGDVCVF ELIKSNVLNQ  300
GEISEFSVIN SVQLTGTK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29585.m000596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580394.10.0B3 domain-containing transcription factor VRN1, partial
TrEMBLB9SR350.0B9SR35_RICCO; Uncharacterized protein
STRINGXP_002528454.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-31B3 family protein