PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29577.m000449

Common Name

LOC8287639, RCOM_0454610

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 425aa MW: 46528.4 Da PI: 6.5633

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29577.m000449	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.1e-10	223	281	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ 29577.m000449 223 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 281 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	219	283	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	221	284	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-11	223	274	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-10	223	277	No hit	No description
Pfam	PF00170	9.8E-9	223	277	IPR004827	Basic-leucine zipper domain
CDD	cd14703	5.78E-26	224	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MDKDKGHSGG LPPPSGRFSS FSPTGSSFNV KPEPSSAAAL PPIAPGSSSD PSHFGHGSDS 60 SRFSHDISRM PDNPPKKLGH RRAHSEILTL PDDISFDSDL GVVGGADGPS FSDETEEDLF 120 SMYLDMDKFN SSSATSAFQL GESSIPTPAA LASASAQAPA TVDVGAGPSE RPRIRHQHSQ 180 SMDGSTTIKP EMLISGAEEV SPADTKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE 240 RKMRYIAELE RKVQTLQTEA TSLSAQLTLL QRDTNGLTAE NSELKLRLQT MEQQVHLQDA 300 LNDALKEEIQ HLKVLTGQAM ANGGPMMNYN SFGTGQQFYP NNHAMHTLLT TQQFQQLQIH 360 SQKQQHQFQQ HQLHQLQQQQ QLQQQQQHQQ QEQQQQSGDL KMRGTMSSPN QKDNSSDVNS 420 TSANE

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MDKDKGHSGG LPPPSGRFSS FSPTGSSFNV KPEPSSAAAL PPIAPGSSSD PSHFGHGSDS  60
SRFSHDISRM PDNPPKKLGH RRAHSEILTL PDDISFDSDL GVVGGADGPS FSDETEEDLF  120
SMYLDMDKFN SSSATSAFQL GESSIPTPAA LASASAQAPA TVDVGAGPSE RPRIRHQHSQ  180
SMDGSTTIKP EMLISGAEEV SPADTKKAMS AAKLAELALI DPKRAKRIWA NRQSAARSKE  240
RKMRYIAELE RKVQTLQTEA TSLSAQLTLL QRDTNGLTAE NSELKLRLQT MEQQVHLQDA  300
LNDALKEEIQ HLKVLTGQAM ANGGPMMNYN SFGTGQQFYP NNHAMHTLLT TQQFQQLQIH  360
SQKQQHQFQQ HQLHQLQQQQ QLQQQQQHQQ QEQQQQSGDL KMRGTMSSPN QKDNSSDVNS  420
TSANE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29577.m000449

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002529479.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-156	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	B9SU10	0.0	B9SU10_RICCO; Transcription factor RF2a, putative
STRING	XP_002529479.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-160	bZIP family protein

Link Out ? help Back to Top
Phytozome	29577.m000449
Entrez Gene	8287639

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]