PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29569.m000147 | ||||||||
Common Name | LOC8261705, RCOM_0452690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28716.2 Da PI: 6.7886 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.5 | 6.2e-25 | 74 | 165 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r+++ ++s ++++i+ r+fvCskeg+r+ + +k ++ ++ + tr gC a+l++ ++ +kw+++ +++eHnHel+p 29569.m000147 74 EFYEMYGRQMGFTIRNNRIRRSLKDNSIIGREFVCSKEGFRAGKCTKrENGVISSLPATREGCSAMLRIAAKDGAKWVIYGFNKEHNHELNP 165 6****************************************9887772344556889********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.8E-22 | 74 | 165 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MASTSGQQVR FNGNYRRWLA ETFERHETTN DELSNNLDGD DNIIKPFIQN FPTALEPVEP 60 IVGKEFESAE DAREFYEMYG RQMGFTIRNN RIRRSLKDNS IIGREFVCSK EGFRAGKCTK 120 RENGVISSLP ATREGCSAML RIAAKDGAKW VIYGFNKEHN HELNPSKIPP RRSHRIAFNE 180 DEKDLKIREL STELHREKKK SAAYQEQLQR VLKYIEEHTQ RLSLQIDTVA NKVRELECEE 240 PDCLDFD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29569.m000147 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533359.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_015583376.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | B9T540 | 0.0 | B9T540_RICCO; Uncharacterized protein | ||||
STRING | XP_002533359.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15811 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-46 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29569.m000147 |
Entrez Gene | 8261705 |