PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29569.m000146 | ||||||||
Common Name | RCOM_0452680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | FAR1 | ||||||||
Protein Properties | Length: 245aa MW: 28050.7 Da PI: 5.9612 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.2 | 8.6e-26 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s ++ ++ r+fvCs+eg+r+ +++ +++ +r+ tr gCka++++ ++ gkw vtk++ eHnH+l+ 29569.m000146 77 DFYFEYAKRTGFTIRTNRIRHSLKDMAVIGRDFVCSREGFRAAKHTLrKDRVLPPRPITREGCKAMVRLAARDGGKWIVTKFVREHNHKLM 167 6*****************************************9998822333349**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.1E-23 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTSTTNGHDG DGVSDDETLV TCEEHKDTEG GLFLHCDSHI VVNNGMILAE PSIENLSANT 60 LEPYTGMAFT SLDDARDFYF EYAKRTGFTI RTNRIRHSLK DMAVIGRDFV CSREGFRAAK 120 HTLRKDRVLP PRPITREGCK AMVRLAARDG GKWIVTKFVR EHNHKLMTHC NFSGELPTIN 180 ILSEEEKDKK IQDLYDELQH ERERSSVIRQ QLWMVLKDVE EHAEFMSLRV EDIINSLKEI 240 ELGNA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29569.m000146 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015583375.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | B9T539 | 0.0 | B9T539_RICCO; Uncharacterized protein | ||||
STRING | XP_002533358.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15728 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-42 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29569.m000146 |