PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29235.m000230
Common NameLOC8277502, RCOM_0409800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 345aa    MW: 36863.6 Da    PI: 9.0209
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29235.m000230genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.44.3e-403393262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++
  29235.m000230 33 QEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 93
                   5799******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-272391IPR003851Zinc finger, Dof-type
PfamPF027012.3E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4323791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMSPNNLQGK QATNKEDNQS SGNRKSTASA RPQEQALKCP RCDSPNTKFC YYNNYSLTQP  60
RHFCKTCRRY WTKGGALRNV PIGGGCRKNK KMKSSSRLSG DSKDSSGSSE IGGFKFFHGI  120
SPAMDFNLGG LSFPRLSPSS GGLYNQFSSF GDMSATSAAA AVSVTNPCFN LDPSGSSPVG  180
SLMGFSYPIS SVTSGFSGAI QDVGTGGGGS GSMNVHTNLA SSIESLSTIN QDLHWKLQQQ  240
RLAMLFGGDD HKDNSVSSLA VENQAQKPQP ILFQNLEISK PEVSGVGNSR KEADTATEWF  300
FGNSYRQVNP TPTNSNSNGN DNTAGASNWN GVQAWGDLHQ YNGLP
Cis-element ? help Back to Top
SourceLink
PlantRegMap29235.m000230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532379.10.0dof zinc finger protein DOF5.7
TrEMBLB9T2B00.0B9T2B0_RICCO; Zinc finger protein, putative
STRINGXP_002532379.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.16e-63Dof family protein