PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29222.m000412

Common Name

RCOM_0408240

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 395aa MW: 44338.1 Da PI: 6.1006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29222.m000412	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.7e-10	241	294	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 +++ hn+ E+ RR ++N ++ L +llP+ + +skK + i k+ eYI + q 29222.m000412 241 KKQEHNAKEKVRRMKLNASYLALGSLLPNsR---RSKKrWTAPVIIDKVLEYIPEVQ 294 6899***********************66...88888************8766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-11	238	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.98E-8	238	298	No hit	No description
PROSITE profile	PS50888	11.903	240	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-6	241	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-9	241	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.1E-4	246	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MSSPPFENPV HLVDHNFFSP LETSDTLWQC QQESNMLSLP IEDHNSIGSF NCQWPFVQES 60 SISSHAAEFT KNVSEWDPDL LLAEEFSASA MSSINEGIPE NILHYHKDRT FLKNVQVSND 120 PWPSYGEGNT GDLDPNMPLE QESFSLAKTR SDEELFGSTV LNACHDNSTS LPSDKNNLRA 180 SGINTNATVE QENTSLDKSN KEKGLRGKRV IKKKEIKHRF RRILTEKLKV QTNAEEGSTS 240 KKQEHNAKEK VRRMKLNASY LALGSLLPNS RRSKKRWTAP VIIDKVLEYI PEVQSEIEEL 300 ILKKNSIVSK IKNGQAIQHN ASVELQAPTV SVHEIKHGEL IIQVCMQTNQ DKGLSILMQN 360 LEAEGMVISS ASSIGVCYTD LLLQCFIIPA FSVYL

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MSSPPFENPV HLVDHNFFSP LETSDTLWQC QQESNMLSLP IEDHNSIGSF NCQWPFVQES  60
SISSHAAEFT KNVSEWDPDL LLAEEFSASA MSSINEGIPE NILHYHKDRT FLKNVQVSND  120
PWPSYGEGNT GDLDPNMPLE QESFSLAKTR SDEELFGSTV LNACHDNSTS LPSDKNNLRA  180
SGINTNATVE QENTSLDKSN KEKGLRGKRV IKKKEIKHRF RRILTEKLKV QTNAEEGSTS  240
KKQEHNAKEK VRRMKLNASY LALGSLLPNS RRSKKRWTAP VIIDKVLEYI PEVQSEIEEL  300
ILKKNSIVSK IKNGQAIQHN ASVELQAPTV SVHEIKHGEL IIQVCMQTNQ DKGLSILMQN  360
LEAEGMVISS ASSIGVCYTD LLLQCFIIPA FSVYL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29222.m000412

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015581095.1	1e-147	transcription factor bHLH160
TrEMBL	B9SU80	0.0	B9SU80_RICCO; Uncharacterized protein
STRING	XP_002529549.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18502	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	8e-25	bHLH family protein

Link Out ? help Back to Top
Phytozome	29222.m000412