PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29222.m000411
Common NameRCOM_0407930
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 260aa    MW: 29482.8 Da    PI: 8.62
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29222.m000411genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-10105158155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 
                    +++ hn+ E+ RR ++N ++  L +ll + +   +skK  +   i+ k+ eYI +Lq
  29222.m000411 105 KKQQHNAKEKVRRMKLNASYLALGSLLSNsR---RSKKrWTAPVIVDKVLEYIPELQ 158
                    6899*************************66...88888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-11100170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-6102162No hitNo description
PROSITE profilePS5088811.846104157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-9104162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6105158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-4110163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPLEQEKFSL AKARSDEELI ESTVLNDCQD NNTSLPLDKD NLRGTVMDTS AIGDQENTSL  60
DKSNKEKGLR GKRVIKKKEI KHRFRRILTE KLMVQPNAEE GSTSKKQQHN AKEKVRRMKL  120
NASYLALGSL LSNSRRSKKR WTAPVIVDKV LEYIPELQSE IEELILKKNS MVSKIKNEQA  180
IQHNASVELQ APTVSVHEVK HGELIIQICM QTDQDKGLSI LMQNLEAESM VISSASSIGV  240
CDDRICYHVH IQEIAKDTRH
Cis-element ? help Back to Top
SourceLink
PlantRegMap29222.m000411
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581095.10.0transcription factor bHLH160
TrEMBLB9SU790.0B9SU79_RICCO; Uncharacterized protein
STRINGXP_002529548.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1850256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.13e-20bHLH family protein