PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29216.m000261
Common NameRCOM_0405730
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 355aa    MW: 38981.6 Da    PI: 9.7882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29216.m000261genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13283328655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  29216.m000261 283 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 328
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16280339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-12281330No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14282339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-10283328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDSSSNPNFH HQNNQQPSSG LLRFRSAPSS FLANFNDNGV TSNNSVMGFQ ELEDKSAVRV  60
REVGAVVNYA NSTQSYSGLP PHYPRHTNSS AATSSSAMDS SFGLIGSMAM GGHHEQEAKR  120
VDSNLARQSS SPAGLFGNLS VQTGYATMKG MGNYARVNGT SGEVSPRLKS QLSFPSRIPS  180
SLSMLSQISE IGSESIGFPY GSWNDSPFSE NFNGMKRDPD DNGKPFSAAQ NGELGNRVHL  240
LSHHLSLPKA SVDMVAMEKF LHFQDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL  300
QELVPNMDKQ TNTADMLDLA VDYIKDLQKQ YKTLSDNRAN CKCLSKQKPV QNQIV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29216.m000261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582852.10.0transcription factor bHLH130 isoform X1
SwissprotQ66GR31e-114BH130_ARATH; Transcription factor bHLH130
TrEMBLB9T2D60.0B9T2D6_RICCO; DNA binding protein, putative
STRINGXP_002532405.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-110bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]