PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29216.m000249 | ||||||||
Common Name | RCOM_0404510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 469aa MW: 52255.4 Da PI: 6.5852 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.4 | 1e-10 | 225 | 260 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le L++ 29216.m000249 225 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 260 7789***********************985555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-8 | 218 | 267 | No hit | No description |
SMART | SM00338 | 2.1E-8 | 221 | 284 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.266 | 223 | 267 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 6.33E-21 | 225 | 271 | No hit | No description |
SuperFamily | SSF57959 | 7.74E-7 | 225 | 267 | No hit | No description |
Pfam | PF00170 | 6.5E-8 | 225 | 263 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 228 | 243 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.4E-32 | 317 | 391 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MGFSWAFQGV VVGETENQAE ERKLVDSSFM ASNKVINNHS TQLEHQQQQQ QQNHHHHHHH 60 QQQHHHQLQE HHHPHQQQQQ IPYGMLQSSS SSSIPGSFIS KDAGAYDLGE LDQALFLYLD 120 GQDPSAVQDQ RQSNTGMRPP TLNIFPSQPM HVVEPSSAKT NTPGLVSSAT SGSKRPSEPS 180 MELANARNDV ASAPEPAKTL KREGNRKGPT TSSSEQEGPK TPDPKTLRRL AQNREAARKS 240 RLRKKAYVQQ LESSRIRLTQ LEQELQRARA QGLFFGGGGN LLAGDQGLPV GINNISSDAA 300 VFDMEYARWV EEHHRLTCEL RAAVQEHLPE NELRLFVDNC LAHYDEVMNL KSMVAKSDVF 360 HLVSGMWKTP AERCFMWMGG FRPSELIKVI LNQIEPLTEQ QILGICGLQQ STQEAEEALS 420 QGLEALNQSL SDTIASDSLS CPPNMANYMG QMAVAMNKLS TLEGFVRQV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29216.m000249 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002532393.2 | 0.0 | bZIP transcription factor TGA10 | ||||
Swissprot | Q52MZ2 | 0.0 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | B9T2C4 | 0.0 | B9T2C4_RICCO; Transcription factor HBP-1b(C1), putative | ||||
STRING | XP_002532393.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4731 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-159 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29216.m000249 |