PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29092.m000462
Common NameRCOM_0384200
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 186aa    MW: 20059.6 Da    PI: 5.6341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29092.m000462genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-182070155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  29092.m000462 20 PVYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAALALKG 70
                   68*****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-112070IPR001471AP2/ERF domain
SMARTSM003808.9E-352184IPR001471AP2/ERF domain
PROSITE profilePS5103223.1432178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-302180IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-212180IPR016177DNA-binding domain
PRINTSPR003675.6E-112233IPR001471AP2/ERF domain
CDDcd000183.09E-322280No hitNo description
PRINTSPR003675.6E-116080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MHCSQPSNTS TNSSVSGRHP VYRGVRRRSS GKWVSEIREP KKPNRIWLGT FPTPEMAAVA  60
YDVAALALKG RDAELNFPNS AASLPVPASA SPRDIQAAAA SAAAAIGAAR DALGIGSSSH  120
QTVIMQESNY RPMVHEFVDE DLIFDMPNLL VNMAEGMLLS PPRLDIAPDA AFDDENPGDQ  180
NLWKFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151480774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29092.m000462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528595.21e-135ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLB9SRH61e-134B9SRH6_RICCO; Dehydration-responsive element-binding protein 1B, putative
STRINGXP_002528595.11e-135(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.18e-40ERF family protein