PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29042.m000023 | ||||||||
Common Name | RCOM_0376190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 168aa MW: 18384.6 Da PI: 9.0496 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.5 | 5.2e-12 | 89 | 119 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k++rr+++NReAAr+sR+RKka++++Le 29042.m000023 89 DKVQRRLAQNREAARKSRLRKKAYVQQLESS 119 79**************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-8 | 84 | 132 | No hit | No description |
SMART | SM00338 | 1.7E-7 | 86 | 157 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.783 | 88 | 132 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.4E-9 | 89 | 118 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.26E-7 | 90 | 130 | No hit | No description |
CDD | cd14708 | 3.69E-24 | 90 | 142 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 93 | 108 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MNSPSTQFVS SGRMGIYEPI HQIGMWGEPF KSNGIPNAST SMFVAGDPNS SQSIIIAVDT 60 KLDNQSEDTS QNTLGPSSKY DQEATKPIDK VQRRLAQNRE AARKSRLRKK AYVQQLESSR 120 LKLIQIEQEL ERARQQGLYI GGGVETSHLG FAGPNNSAID IGTNAVTC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29042.m000023 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015584077.1 | 1e-113 | transcription factor TGA1, partial | ||||
Swissprot | Q39237 | 6e-57 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | B9T8X0 | 1e-121 | B9T8X0_RICCO; Uncharacterized protein | ||||
STRING | XP_002534689.1 | 1e-122 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF37225 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 3e-59 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29042.m000023 |