PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28976.m000163 | ||||||||
Common Name | RCOM_0366280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | AP2 | ||||||||
Protein Properties | Length: 610aa MW: 68297.5 Da PI: 7.453 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.2 | 1.7e-12 | 263 | 319 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g 28976.m000163 263 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 319 78*******************87776664446655.77******************98 PP | |||||||
2 | AP2 | 46.6 | 8.7e-15 | 364 | 413 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g 28976.m000163 364 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 413 9***************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.45E-18 | 263 | 327 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-14 | 263 | 329 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-9 | 263 | 319 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 264 | 328 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-22 | 264 | 333 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.451 | 264 | 327 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 265 | 276 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 362 | 422 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.75E-24 | 362 | 423 | No hit | No description |
PROSITE profile | PS51032 | 19.19 | 363 | 421 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 363 | 421 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 363 | 427 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 364 | 413 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-6 | 403 | 423 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MKFINNDDNN NNTNWLGFSL SPNHMKMEVN NHQTQSPSSS SVPTAIPASL FHSQSHLSYS 60 SYCGAVEGEH SGFYFPLPVM PLKSDGSLCM MEALARSQPQ ATTVTNSTPK LEDFFGGATM 120 GNHHYETNDR EAMALSLDSM YYHQQQQHQD HDQANNQNCL NHLHQSSRQQ QQQQQQQIQA 180 QHYPYYSTNF RSYEIAMTYG DLQSLSLSMS PGSQSSCITG SQQIASTVTE CAAMETKKRG 240 PDKVDQKPIV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQGGY 300 DMEEKAARAY DLAALKYWGP STHINFPLEN YQQELEEMKN MTRQEYVAHL RRKSSGFSRG 360 ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGANAVTNF 420 DITRYDVERI MASNTLLAGE LARRNKDTGA GNEATAIHNP SIHNSTPTQE NAQSESDWKM 480 ALYQSSQQLD QKASNIIDNY KTQAFALAPE NVIGIDAIRS VHQQQDVEDS AKMGNHLSNA 540 SSLVTSLSSS REGSPDRASL PMLFAMPPSA TSKLYSTSPS SNMNSWIPTA QLRPAVTLPH 600 MPVFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28976.m000163 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021649956.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-173 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | B9T5Q9 | 0.0 | B9T5Q9_RICCO; Uncharacterized protein | ||||
STRING | XP_002533578.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-148 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 28976.m000163 |