PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28976.m000155 | ||||||||
Common Name | LOC8276070, RCOM_0366100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 201aa MW: 23345.9 Da PI: 10.4265 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.8e-11 | 93 | 137 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 ++ rr+++NRe+ArrsR RK++ +e+L++ v L eN+++ ++l 28976.m000155 93 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLRVENREMTNRL 137 5789**********************************9998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.4E-12 | 89 | 153 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.9E-9 | 90 | 137 | No hit | No description |
PROSITE profile | PS50217 | 10.703 | 91 | 161 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-8 | 93 | 137 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.39E-10 | 93 | 141 | No hit | No description |
CDD | cd14702 | 5.38E-18 | 94 | 141 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 96 | 111 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MLSTVSASFL SPDSMIGNPF ASFESGFTPW DDCSQFFENN LDSQYSSTKA AGSTSGSEEP 60 NEPNRSDPTP ANSNSSSDQE PNQRTVASVI DERKRRRMIS NRESARRSRM RKQKHLENLR 120 NQVNRLRVEN REMTNRLRFV LYHWQSVRRE NDQLRSEHSM LRQKLSNIRQ ILMFRQLQQF 180 TSAWPCNNTV TTEQIPPSLI T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 96 | RKRRR |
2 | 92 | 113 | RKRRRMISNRESARRSRMRKQK |
3 | 105 | 112 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28976.m000155 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533570.1 | 1e-146 | basic leucine zipper 4 | ||||
TrEMBL | B9T5Q1 | 1e-145 | B9T5Q1_RICCO; Ocs element-binding factor, putative | ||||
STRING | XP_002533570.1 | 1e-146 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5435 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 1e-38 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
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Phytozome | 28976.m000155 |
Entrez Gene | 8276070 |