PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28966.m000535

Common Name

RCOM_0364340

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 160aa MW: 17305.2 Da PI: 6.3387

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28966.m000535	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	25.7	1.3e-08	66	107	1	42
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRla 42 +++lL++cAe +s++d+++a++l++ ls +sp+gd+ +R a 28966.m000535 66 MRQLLISCAELISQSDFSAAHRLISVLSSSSSPYGDSRERSA 107 689************************************976 PP
2	GRAS	55.5	1.2e-17	105	159	320	373
GRAS 320 eeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++aGF++vpls +a +qaklllr ++ s+gy+++ ++s++lgW++r+L+svS+W 28966.m000535 105 RSAGFNNVPLSPYALSQAKLLLRLHYpSEGYHLQMINDSFFLGWQNRALFSVSSW 159 579**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.1E-15	105	159	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MLGSLNSSSS SPHEQDQQEE ATAVLDLQFQ QIINPQATAA AAATRAAATT TSTTSVGGFT 60 SSAIYMRQLL ISCAELISQS DFSAAHRLIS VLSSSSSPYG DSRERSAGFN NVPLSPYALS 120 QAKLLLRLHY PSEGYHLQMI NDSFFLGWQN RALFSVSSWH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28966.m000535

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021636879.1	3e-28	scarecrow-like protein 18
TrEMBL	B9ST94	1e-111	B9ST94_RICCO; Uncharacterized protein
STRING	XP_002529213.1	1e-112	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	2e-23	GRAS family protein

Link Out ? help Back to Top
Phytozome	28966.m000535