PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28883.m000751
Common NameLOC8260405, RCOM_0353920
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 393aa    MW: 43512.7 Da    PI: 6.4
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28883.m000751genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.52.6e-32233288156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  28883.m000751 233 KQRRCWSPELHRRFLHALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 288
                    79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.466230290IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-29230291IPR009057Homeodomain-like
SuperFamilySSF466892.06E-18231291IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-27233288IPR006447Myb domain, plants
PfamPF002491.6E-7235286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDYAEKMQRC HEYVEALEEE KRKIQVFQRE LPLCLELVTQ AIEACKRELS GTTTEYMHGQ  60
SECSEQTTST DGTANGTGTR SLVLEEFIPI KRINSSSHND NDNDDDNENE KEDNDDDEEE  120
EDQDSHKPNK SIRDINNDQK KKSDWLRSVQ LWNQSSPDSE PPKEDLPRKA AVTEVKRNGG  180
AFQPFHKEKG IAKTPPSVPA SATSSSAETG TGGGTSGAGN NRKEDKDGQA QRKQRRCWSP  240
ELHRRFLHAL QQLGGSHAAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPTIHNNS  300
NPQAPQFVVV GGIWVPPPEY AAVAATTASM ETVTTAAANG IYAPVAAPLG TIPKQQRAQS  360
QHLQSERRGS HSERSNSPAT SSSTHTTTNS PVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-13233286255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28883.m000751
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529155.10.0transcription factor HHO3 isoform X2
SwissprotQ9FPE81e-113HHO3_ARATH; Transcription factor HHO3
TrEMBLB9ST360.0B9ST36_RICCO; DNA binding protein, putative
STRINGXP_002529155.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-107G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]