PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28859.m000324
Common NameRCOM_0347240
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 651aa    MW: 75431.4 Da    PI: 6.3836
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28859.m000324genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.13.5e-2471162190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                    ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+++++++ HnHel 
  28859.m000324  71 EYYSNFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYISQFSNVHNHELL 162
                    69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-2271162IPR004330FAR1 DNA binding domain
PfamPF105514.0E-13290347IPR018289MULE transposase domain
PfamPF044343.0E-8525559IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.497525560IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-4535562IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIKHEGD DQISVSSNIV KNETPSTSSS TEVVFTPYVG  60
QIFRSDDDAF EYYSNFARKN GFSIRKARST ESQNLGVYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTFELLE ACKAMAERDA DFIYDYTMDE NGKVENIAWS YGDSVRAYTV YDESSHSLGW  300
ALQSFVRFMQ GRQPQTIITD IDSGLRDAIA RELPNTKHII CIWHILSKLS SWFSLALGSQ  360
FEDFKAEFDM LCHLETVEDF EQQWNLLVAR FGFASDKHMA LLFSYRGSWS ISYIRGYFVA  420
RTMSAEFSQS LDIFLKRILS GQTCLQVFFE QVSIAVNFEN QSRDGMQYMH IKTCMPIEEH  480
ARCILTPYAF NVFQNEIVLS MQYGVQEMSD GSYLVRHYKK MDGEYLVWIA ADEQIHCSCK  540
EFEHSGILCR HSLRVLAVKN YFQLPEKFYP LRWRREHSLV AMDDQNAQSN GNECAQAFHS  600
LASTLLTEAL ASKERFTYVH RELTGLLDHV RSMPVTEEFS VSMANNNISE S
Cis-element ? help Back to Top
SourceLink
PlantRegMap28859.m000324
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581497.10.0LOW QUALITY PROTEIN: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLB9SW490.0B9SW49_RICCO; Uncharacterized protein
STRINGXP_002530218.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]