PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28838.m000250

Common Name

LOC8271725, RCOM_0340230

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 497aa MW: 53912.3 Da PI: 6.1489

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28838.m000250	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	135	195	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 28838.m000250 135 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 195 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	133	192	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	137	193	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	139	193	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	141	177	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSEPKDPAIK LFGKMIPFPE ISTSTAAAAS ATTCSADDDC QDRERPSCAS SSLEEGDTTG 60 DGEERESDKD AEGETLAESK QENGSEESSN PDSISGITEN PKTSSVEKDD TSKTSKTEEE 120 QSDTSNSQEK TPKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR 180 NVPVGAGRRK NKNSASHYRH ITVSEALQNV QNDIPNGIHH PALKSNGTFL TFGSDTPLHE 240 SVASALNLAD KTVQNCTRNG FHKPEALRIP VSYAGVEHGD AHSKGSLATA SNSKDEASKS 300 GPQATVIQNC QGFPPQIPCY PGTPWPYPWN SAQWSSPVPP TAFCPPGFPM PFYPTTAYWG 360 CTVPGTWNMS WIPQPPSPNE TASTSGPNSP TLGKHSRDDN MLKPSNSGET PEKEKSAERC 420 LWIPKTLRID DPGEAAKSSI WTTLGIKNDR PDSIGGRGLF KAFESKGNEK NHAAETSSVL 480 QANPAALSRS LKFRESS

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSEPKDPAIK LFGKMIPFPE ISTSTAAAAS ATTCSADDDC QDRERPSCAS SSLEEGDTTG  60
DGEERESDKD AEGETLAESK QENGSEESSN PDSISGITEN PKTSSVEKDD TSKTSKTEEE  120
QSDTSNSQEK TPKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR  180
NVPVGAGRRK NKNSASHYRH ITVSEALQNV QNDIPNGIHH PALKSNGTFL TFGSDTPLHE  240
SVASALNLAD KTVQNCTRNG FHKPEALRIP VSYAGVEHGD AHSKGSLATA SNSKDEASKS  300
GPQATVIQNC QGFPPQIPCY PGTPWPYPWN SAQWSSPVPP TAFCPPGFPM PFYPTTAYWG  360
CTVPGTWNMS WIPQPPSPNE TASTSGPNSP TLGKHSRDDN MLKPSNSGET PEKEKSAERC  420
LWIPKTLRID DPGEAAKSSI WTTLGIKNDR PDSIGGRGLF KAFESKGNEK NHAAETSSVL  480
QANPAALSRS LKFRESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28838.m000250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002531852.1	0.0	cyclic dof factor 2 isoform X1
TrEMBL	B9T0T3	0.0	B9T0T3_RICCO; Zinc finger protein, putative
STRING	XP_002531852.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-119	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	28838.m000250
Entrez Gene	8271725