PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28838.m000246
Common NameRCOM_0340090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 388aa    MW: 42526.9 Da    PI: 8.3405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28838.m000246genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1694139147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v ++G+ +W++Ia++++ gR++k+c++rw++ 
    28838.m000246  94 RGHWKPAEDAKLKELVSLYGPQNWNLIAAKLQ-GRSGKSCRLRWFNQ 139
                      899*****************************.***********996 PP
2Myb_DNA-binding57.33.6e-18146189146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+lv a++ +G++ W++I++ ++ gRt++ +k++w+ 
    28838.m000246 146 RCAFSEEEEERLVAAHRIHGNK-WALISKLFP-GRTDNAVKNHWHV 189
                      5689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.12689140IPR017930Myb domain
SMARTSM007175.1E-1493142IPR001005SANT/Myb domain
PfamPF002494.3E-1694139IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-2794187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-2595147IPR009057Homeodomain-like
CDDcd001677.02E-1397138No hitNo description
PROSITE profilePS5129426.83141195IPR017930Myb domain
SMARTSM007173.8E-15145193IPR001005SANT/Myb domain
PfamPF002492.4E-15146188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-20148194IPR009057Homeodomain-like
CDDcd001672.77E-12148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
METFRDMGSL SLVPIINSVP VPVPPLKNIC YCKVFDNKVD HQIEFSLMAR CCTSCLDSNQ  60
NSEAVDDREC NVDKGSGGAE VVKMDYGLSK VCARGHWKPA EDAKLKELVS LYGPQNWNLI  120
AAKLQGRSGK SCRLRWFNQL DPRINRCAFS EEEEERLVAA HRIHGNKWAL ISKLFPGRTD  180
NAVKNHWHVI MARKYRQQSV AYRRKILTRS TQTKVEHGNG SGSSRIGSLK LCSGSISRPS  240
NLQFATSNAG ASNGSCDNTT SEVAAENGRV MFVRSSNLLS FPHGSCADHT SFDFFPGGHN  300
GCEILSHKEH CNMPKDGTTF TVFHTMQQSS NHHFSADHMA SPPASQVSIS GPSSSSSLSS  360
IAENKAISHF ETTVSSPPFI DFLGIGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-33941947107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28838.m000246
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531848.20.0transcription factor CSA
TrEMBLB9T0S90.0B9T0S9_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002531848.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.11e-69myb domain protein 117