PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28779.m000140
Common NameLOC8273730, RCOM_0331400
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 515aa    MW: 55937.9 Da    PI: 8.3595
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28779.m000140genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.23.7e-08160222163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    eke +r rr   NRe+Ar   +R++a +eeL++k++ L  eN+ Lk e e+  ke ++l+s +
  28779.m000140 160 EKEERRLRRILANRESARQTIRRRQALCEELTRKAADLAWENENLKREKESVLKEFQSLESRN 222
                    78999******************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-5157220No hitNo description
PfamPF001701.6E-7160223IPR004827Basic-leucine zipper domain
SMARTSM003389.8E-10160224IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.151162225IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.37E-5164216No hitNo description
CDDcd147021.73E-14165216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MDLERCSVSS SSSSFSSSSA SSSAEVEVDR MVRIEMEAAE ALADLAHLAM KESGSGDSST  60
AGGGRWGSKG KRGKKRVKSE SPPLDPFTKP VLDSLTNCLD PAPDPAPVDQ QHDEPLCSDT  120
VIKAAKVEQD ADIPKPSLVS VKNHPSYGGG RSRQNLTEAE KEERRLRRIL ANRESARQTI  180
RRRQALCEEL TRKAADLAWE NENLKREKES VLKEFQSLES RNKYLKAQMA KLIKTEVEDS  240
PADLKSAHVD NSLAPATNCS LLLYNQHPFS SLCWPSIIQS SNSVQSHLGP QSTIMIPSSI  300
SMPPNGKLDS SQQPQENPMI TNGPRTPLYI VSCPWFFPVP EHANGLHPLP SFGLQHKQDG  360
TSVNNQCSRT SSAKATALMQ NQFSSASEKV NSEDGNPAIN DLNETPVGVP PEGGSHSAAP  420
NHKETVVAPV MLSSITPTVA VKNETGTRSE SVPHTDGICT TSKQLISALP GKNRDPFKFP  480
SKNLVDAAAA AVARRRRKEL TKLKNLHGRQ CRMNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493498RRRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap28779.m000140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533547.10.0uncharacterized protein LOC8273730
TrEMBLB9T5M80.0B9T5M8_RICCO; DNA binding protein, putative
STRINGXP_002533547.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64002834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.19e-65bZIP family protein