PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28725.m000324 | ||||||||
Common Name | RCOM_0321860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13767.6 Da PI: 10.7769 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.5 | 4.3e-12 | 4 | 92 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+l++ dv+k+ l +p ++++ + +gk ++l ++ ++++++++++ rkk++ vltkGW +Fv+ +Lk+gD++v++ ++++ 28725.m000324 4 FKKKLSQTDVTKR--LAFPTRCFKGFlpllQGK--HFVDLEVM-YKSQTMKFRCSKRKKGKYlkPVLTKGWLDFVRREKLKAGDMIVLREEKNE 92 8899988888875..9*******9999876555..33444444.5789******766666658899***********************55443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-12 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0011 | 4 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.18E-13 | 4 | 103 | No hit | No description |
Pfam | PF02362 | 9.5E-9 | 4 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-15 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MMKFKKKLSQ TDVTKRLAFP TRCFKGFLPL LQGKHFVDLE VMYKSQTMKF RCSKRKKGKY 60 LKPVLTKGWL DFVRREKLKA GDMIVLREEK NEAAGAEFKI EIIMKSIRLF GKDICID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28725.m000324 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9SXG4 | 1e-78 | B9SXG4_RICCO; Uncharacterized protein | ||||
STRING | XP_002530683.1 | 2e-79 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Link Out ? help Back to Top | |
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Phytozome | 28725.m000324 |