PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28694.m000665 | ||||||||
Common Name | LOC8266956, RCOM_0311750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 28021.5 Da PI: 4.7553 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.1 | 9.8e-41 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i++lq+q+e +k+el+l 28694.m000665 15 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLNQPDKDEAMRTIIFQSDVRANDPVGGCYRIIRELQRQIEFHKNELDL 110 7*********************************************************************************************99 PP DUF260 97 lkee 100 + ++ 28694.m000665 111 VLHQ 114 8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.849 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-37 | 15 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSITRIGNG TTTQACAACK YQRRKCAPDC ILAPYFPHDR QRQFLNAHKL FGVSNITKII 60 KNLNQPDKDE AMRTIIFQSD VRANDPVGGC YRIIRELQRQ IEFHKNELDL VLHQLAICRA 120 QTQQQQQPHF QILESDDSAT LGCDIVNADS LDIYDPILQY QYAQTQEEQE FVVQDNNQQL 180 QESINALAIQ ESSLSPSSPS LHLKQPFDNE CDDIKPLLDI NDVKFEPEEL VERKFLQSTQ 240 LVISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 2 | 109 | 1 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 2 | 109 | 1 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28694.m000665 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002527399.1 | 0.0 | LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 1e-72 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | B9SN30 | 1e-180 | B9SN30_RICCO; LOB domain-containing protein, putative | ||||
STRING | XP_002527399.1 | 1e-180 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-69 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | 28694.m000665 |
Entrez Gene | 8266956 |
Publications ? help Back to Top | |||
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