PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28650.m000189

Common Name

LOC8287882, RCOM_0300620

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 662aa MW: 75340.7 Da PI: 6.569

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28650.m000189	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.9	5.2e-115	289	658	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+a +gd++ a + L+ ++ +asp+gd++qRla+yf++AL+arla+s++ + +l +++ n+++ l+a++l++ v+P+ k+s++ 28650.m000189 289 STLLIQCAQATGTGDQRTAYQQLKLIRLHASPYGDANQRLAHYFANALEARLAGSGKLMP-TLFIGPST--NTADILKAYQLYVSVCPFRKMSNFF 381 579*************************************************655554.55444444..589****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 +N++I +ave+++r+HiiDf+is+G+QWp+++ L++Rp+gpp++RiTg++ p++g e++eetg+rL+++A++l+vpfe+n+ +a+++e+++ 28650.m000189 382 TNRTITKAVEKATRLHIIDFGISYGFQWPCFIYHLSTRPGGPPKVRITGIDYPQPGfrPGERVEETGRRLKRLADKLNVPFEYNA-IAQKWETIQG 476 ****************************************************99*************************.7***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e+L+++++E++aV+++ +l++l+d++ l+s+rd+vL+l+ks++P ++ + + ++n++ F++rf eal ++s+lfd++ea + re++er + Er 28650.m000189 477 EDLQIDKDEVVAVCCMNRLKNLPDDTIVLDSPRDAVLRLIKSINPVIFLHGVVNGSYNAPFFATRFREALFHFSSLFDMFEAIATREDQERLVFER 572 ******************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 el+g++++nvvaceg+er+er et+++W+ r ++ GF+++pl ++++k ++ + + +++d + v+e+ +++++gWk+r + ++SaW+ 28650.m000189 573 ELIGKDVMNVVACEGSERFERPETYKQWQIRNSRIGFRQLPLHQDIVKRVRNIKNDYHKD-FAVDEDGHWMLMGWKGRIIHAISAWK 658 ******************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.155	262	639	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-112	289	658	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MGGKFEFRSF QVSSNHINPD DGFGFNLESV NSASLTTNLQ PFRSSTRSFE LSSYGDSAYN 60 SETSNFSQAV LKYISDMLME EDLEDKPCML QDCLALQAAE KSLYDVLGEK YPPICDQSPS 120 SIDQNNENPD DYFATASDVG SCNSYPSADN LAELNWNFDQ GKFESANILN RVTGNVNKLP 180 DSAPQKSGRS FLSNLSRGRK NQQHENGSYL EEEGRSKKHS AVIYTGVSDQ LEIFDNSFLH 240 KVENNESLPC PLFDASRNEE SKKLQQNEQS PNNTRMRRHA KDKKMFDLST LLIQCAQATG 300 TGDQRTAYQQ LKLIRLHASP YGDANQRLAH YFANALEARL AGSGKLMPTL FIGPSTNTAD 360 ILKAYQLYVS VCPFRKMSNF FTNRTITKAV EKATRLHIID FGISYGFQWP CFIYHLSTRP 420 GGPPKVRITG IDYPQPGFRP GERVEETGRR LKRLADKLNV PFEYNAIAQK WETIQGEDLQ 480 IDKDEVVAVC CMNRLKNLPD DTIVLDSPRD AVLRLIKSIN PVIFLHGVVN GSYNAPFFAT 540 RFREALFHFS SLFDMFEAIA TREDQERLVF ERELIGKDVM NVVACEGSER FERPETYKQW 600 QIRNSRIGFR QLPLHQDIVK RVRNIKNDYH KDFAVDEDGH WMLMGWKGRI IHAISAWKPI 660 EE

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MGGKFEFRSF QVSSNHINPD DGFGFNLESV NSASLTTNLQ PFRSSTRSFE LSSYGDSAYN  60
SETSNFSQAV LKYISDMLME EDLEDKPCML QDCLALQAAE KSLYDVLGEK YPPICDQSPS  120
SIDQNNENPD DYFATASDVG SCNSYPSADN LAELNWNFDQ GKFESANILN RVTGNVNKLP  180
DSAPQKSGRS FLSNLSRGRK NQQHENGSYL EEEGRSKKHS AVIYTGVSDQ LEIFDNSFLH  240
KVENNESLPC PLFDASRNEE SKKLQQNEQS PNNTRMRRHA KDKKMFDLST LLIQCAQATG  300
TGDQRTAYQQ LKLIRLHASP YGDANQRLAH YFANALEARL AGSGKLMPTL FIGPSTNTAD  360
ILKAYQLYVS VCPFRKMSNF FTNRTITKAV EKATRLHIID FGISYGFQWP CFIYHLSTRP  420
GGPPKVRITG IDYPQPGFRP GERVEETGRR LKRLADKLNV PFEYNAIAQK WETIQGEDLQ  480
IDKDEVVAVC CMNRLKNLPD DTIVLDSPRD AVLRLIKSIN PVIFLHGVVN GSYNAPFFAT  540
RFREALFHFS SLFDMFEAIA TREDQERLVF ERELIGKDVM NVVACEGSER FERPETYKQW  600
QIRNSRIGFR QLPLHQDIVK RVRNIKNDYH KDFAVDEDGH WMLMGWKGRI IHAISAWKPI  660
EE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-53	271	659	2	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28650.m000189

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002533751.1	0.0	scarecrow-like protein 14
TrEMBL	B9T682	0.0	B9T682_RICCO; Chitin-inducible gibberellin-responsive protein, putative
STRING	XP_002533751.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-176	GRAS family protein

Link Out ? help Back to Top
Phytozome	28650.m000189
Entrez Gene	8287882