PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 28650.m000186 | ||||||||
Common Name | RCOM_0300290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 663aa MW: 75257.7 Da PI: 6.2991 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362.4 | 6.6e-111 | 290 | 659 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++L +cA+av+++d++ a++lL ++++ +sp gd +qRla++f+++L+arla++++ y+ s+ts + l+a++++ ++P+ ++shl a 28650.m000186 290 TVLPQCAQAVANDDQTTAKELLRQIKQYSSPFGDGNQRLAHFFANGLEARLAGTGTPGYAPAVNSTTS---AAGMLKAYHAYTTACPFQTMSHLYA 382 5789*************************************************888888777666666...8999********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++I++ +e+ +r+HiiDf+i +G+QWp+L++ L++R +gpp+l iTg++ p++g +e++eetg+rL+k++e+++vpfe++ +a+++e++++e 28650.m000186 383 NETIMKLAEKTTRLHIIDFGILYGFQWPCLIEDLSTRHGGPPRLHITGIEFPQPGfrPAERVEETGRRLSKYCERFNVPFEYDS-IAQNWESIQYE 477 ******************************************************9*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +++++++E+++Vn+ ++l++++d+++ ++s rd++Lkl+++++P+++++ + +n++ Fl+rf +al ++salfd++++++pre+ er++ E+e 28650.m000186 478 DFKIDRNEMIVVNCLYRLKNIPDDTMVVNSMRDSILKLMRRINPDIFIHGVVNGTYNAPFFLTRFRDALFHFSALFDMIDSTIPREEPERMMFEKE 573 ************************************************************************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++gr +vnv+aceg er+er et+++W++r +aGF+++pl+++++k++ + ++ +++ + v+e+s+++++gWk+r ++++ +W+ 28650.m000186 574 VFGRYAVNVIACEGGERVERPETYRQWQARNIRAGFRQLPLDQEIMKKVITTVKSNYNKNFIVDEDSQWMLQGWKGRIIYALAVWK 659 *********************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.767 | 262 | 639 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-108 | 290 | 659 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 663 aa Download sequence Send to blast |
MDDALLRAPP GAMSGFRFEY GTMSVLPNQH LVNGFKLNHS SVVDPYRSLH PKNAHALSSD 60 SATSTSSSFE LDSPDNSDIS NVVLKYISDM LMEEELESKN FMFEDCLALQ AAEKSFYDVL 120 GQKYPASLDQ SPFLDQNIHS LEGTSTWCGC GSHLENAIQV PDLYCRSFSN DDSLLLSESQ 180 TKDYARGCCS FSSSRDRKHH QREESACVEG RSNKHSAFSV EQPEDTKIFD EVLLCQARNN 240 DSASCVPQNA LQGGGDGQEK NHGRTEGSNR RTARTKKRGS NKRDMMDLWT VLPQCAQAVA 300 NDDQTTAKEL LRQIKQYSSP FGDGNQRLAH FFANGLEARL AGTGTPGYAP AVNSTTSAAG 360 MLKAYHAYTT ACPFQTMSHL YANETIMKLA EKTTRLHIID FGILYGFQWP CLIEDLSTRH 420 GGPPRLHITG IEFPQPGFRP AERVEETGRR LSKYCERFNV PFEYDSIAQN WESIQYEDFK 480 IDRNEMIVVN CLYRLKNIPD DTMVVNSMRD SILKLMRRIN PDIFIHGVVN GTYNAPFFLT 540 RFRDALFHFS ALFDMIDSTI PREEPERMMF EKEVFGRYAV NVIACEGGER VERPETYRQW 600 QARNIRAGFR QLPLDQEIMK KVITTVKSNY NKNFIVDEDS QWMLQGWKGR IIYALAVWKP 660 VHD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-49 | 292 | 659 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 28650.m000186 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015638.1 | 0.0 | LOW QUALITY PROTEIN: scarecrow-like protein 33 | ||||
TrEMBL | B9T679 | 0.0 | B9T679_RICCO; Chitin-inducible gibberellin-responsive protein, putative | ||||
STRING | XP_002533748.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 28650.m000186 |