PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28644.m000915

Common Name

LOC8281407, RCOM_0297030

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

WRKY

Protein Properties

Length: 168aa MW: 19402.4 Da PI: 5.5865

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28644.m000915	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.8	2.6e-29	107	165	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K vk+s++pr+Y++C agC+vkk v+r++edp++v++tYeg Hnhe 28644.m000915 107 MDDGYRWRKYGKKAVKNSRNPRNYFKCLKAGCNVKKTVQRDTEDPDYVTTTYEGMHNHE 165 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.8E-31	93	166	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-26	100	165	IPR003657	WRKY domain
PROSITE profile	PS50811	27.508	102	167	IPR003657	WRKY domain
SMART	SM00774	8.4E-31	107	166	IPR003657	WRKY domain
Pfam	PF03106	1.5E-23	108	165	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSDSNCSSFL EANTPHNPNN FNHLDNYETE TDIIDHENFE PFDLMVAEEL ESDFTSILAE 60 LQQEITTNNT ILSTPDVPRR HESGGKGVKI DERKRIAFRT KSGIDIMDDG YRWRKYGKKA 120 VKNSRNPRNY FKCLKAGCNV KKTVQRDTED PDYVTTTYEG MHNHEALH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-23	97	165	7	75	Probable WRKY transcription factor 4
2lex_A	2e-23	97	165	7	75	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28644.m000915

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014534.1	6e-91	probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-32	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	B9SM87	1e-124	B9SM87_RICCO; WRKY transcription factor, putative
STRING	XP_002527106.1	1e-124	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	8e-35	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	28644.m000915
Entrez Gene	8281407

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]