PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28637.m000203 | ||||||||
Common Name | LOC8276615, RCOM_0294100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 21185.4 Da PI: 10.3412 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00051 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+ L H +H 28637.m000203 48 FECKTCNKKFSSFQALGGHRASH 70 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 39 | 71 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.3E-8 | 47 | 70 | No hit | No description |
SMART | SM00355 | 0.11 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.0E-11 | 48 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.3E-8 | 99 | 126 | No hit | No description |
PROSITE profile | PS50157 | 9.182 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.28 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.7E-10 | 104 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAMKRVRQDA EFDSLDMAKC LMLLSHNLVE NSKPTNSFIR TSSNDNMFEC KTCNKKFSSF 60 QALGGHRASH KRPRLFMGPA ADSKSASSDD QAVHSSGTKK PKMHECSICG VEFALGQALG 120 GHMRRHRAAA MAQTFASSAK VKNTGCVVQK LPVLRRSNSS KRVFGLDLNL TPLENDLEYL 180 FGKMAPKVDL FV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28637.m000203 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533000.1 | 1e-141 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 6e-52 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | B9T431 | 1e-140 | B9T431_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002533000.1 | 1e-141 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 4e-43 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 28637.m000203 |
Entrez Gene | 8276615 |