PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28617.m000206 | ||||||||
Common Name | RCOM_0290450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 126aa MW: 15120.3 Da PI: 9.6426 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.3 | 1e-11 | 10 | 108 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.grse 89 f k+l++s+ + ++l +p + ++++ +++ s+ t +d++g+ + +++++r+++ y+ ++ W Fv+a+ L++gD+v F+ + ++se 28617.m000206 10 FRKILKQSHIT--HQLNIPEQVLQRYpiyNLE--YSRNFTCYDKDGNLFPFRISIRRSPVYfkpYFARAVWGPFVEAKSLRVGDVVEFYTMiDNSE 101 66777444443..569**********966444..67789999***********999999888889999*********************6535577 PP E..EEEE CS B3 90 felvvkv 96 + v++ 28617.m000206 102 AGIQVRA 108 6666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-14 | 4 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-10 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.16E-14 | 9 | 107 | No hit | No description |
Pfam | PF02362 | 2.8E-9 | 10 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MGDRNMQLIF RKILKQSHIT HQLNIPEQVL QRYPIYNLEY SRNFTCYDKD GNLFPFRISI 60 RRSPVYFKPY FARAVWGPFV EAKSLRVGDV VEFYTMIDNS EAGIQVRAWR QEPGTNNWRH 120 VEEFMP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 28617.m000206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9T454 | 3e-90 | B9T454_RICCO; Uncharacterized protein | ||||
STRING | XP_002533023.1 | 5e-91 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15290 | 3 | 12 |
Link Out ? help Back to Top | |
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Phytozome | 28617.m000206 |