PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28582.m000318
Common NameRCOM_0277920
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 534aa    MW: 59028.2 Da    PI: 7.8864
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28582.m000318genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.78.2e-31171225155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+rW+ eLHe+F+++v++LGG+ekAtPktil++m+ kgLt+ hvkSHLQkYR 
  28582.m000318 171 KNRMRWSRELHEKFINCVDNLGGAEKATPKTILKMMESKGLTIFHVKSHLQKYRA 225
                    78****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.823168228IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-27169225IPR009057Homeodomain-like
SuperFamilySSF466892.33E-15169224IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-22171226IPR006447Myb domain, plants
PfamPF002494.3E-8173224IPR001005SANT/Myb domain
SMARTSM003600.0079246339IPR000504RNA recognition motif domain
SuperFamilySSF549283.66E-12282343IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.2E-10282341IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.183282357IPR000504RNA recognition motif domain
PfamPF000761.8E-7282334IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3303.7E-23351436IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549285.91E-24355438IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010217.302357434IPR000504RNA recognition motif domain
SMARTSM003607.3E-24358430IPR000504RNA recognition motif domain
PfamPF000767.5E-16359426IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEGGSKCQKL GPHMLSMSDL DQLASAVYAT EKHDGEYGIA SHLSSQAPEA NTLPPIESSG  60
VEIVTESNLQ TILKLLFCSN QHHKSCEMSQ KSLFSIESRG NDHFLSHDNI KLLTANPNLI  120
GTHLQFPSIP QNNPELIPPS EREKSSLRDL EVASFTCSSS SAYSRPRHSR KNRMRWSREL  180
HEKFINCVDN LGGAEKATPK TILKMMESKG LTIFHVKSHL QKYRAEKYMS ERKQGETERT  240
SSDVPLLYME NIMQIKETLQ LQLDFQKQLN EQLEGPDPHM FLAQAFRVHG EIEEGAVIYD  300
KATGKSRGYG FITYKHMEST QIALRAPSKL IDGRLAVCNL ACEGLTGAST TPDLAQRKLY  360
IGGLSPEITS EMLLNFFGRH GEIEEGSVAY DKDTNESRGF GFVTYKTVEA AKKAIDDPQK  420
VLGGRSIIVK LADTHKGKTV QTQMPASVAP VPLLMTAGYT QPGKAHPGPA PVGYSYPQTM  480
PSYPASSYPS PPTAPAPYPL QSQYQYPPVA MKKEPFGPPA PMGMGGYPYY LPKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-20171228158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-20171228158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-20171228158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-20171228158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28582.m000318
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530353.20.0uncharacterized protein LOC8263213
TrEMBLB9SWI50.0B9SWI5_RICCO; Uncharacterized protein
STRINGXP_002530354.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1083433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.22e-35G2-like family protein