PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28582.m000317
Common NameLOC8263213, RCOM_0277910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 316aa    MW: 35601.4 Da    PI: 8.6584
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28582.m000317genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.76.9e-30181235155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+rW++eLHe+F+++v++LGG+ekAtP+til++m+ kgLt+ +vkSHLQkYR 
  28582.m000317 181 KKRMRWNQELHEKFINCVNNLGGAEKATPRTILKMMESKGLTIFQVKSHLQKYRA 235
                    78****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.978178238IPR017930Myb domain
SuperFamilySSF466893.23E-15179235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-25179236IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-22181236IPR006447Myb domain, plants
PfamPF002491.1E-8183234IPR001005SANT/Myb domain
PfamPF143795.9E-16263309IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGGSQWQFLG PNMLPSISAD DLDQLASAVY ATDCYLEFRK HDDEYGIASP SSQVPEPNST  60
IVQMPPNKSS GDGISIDSNL QTILKPYFCS NQLHKSCEIF QKGLSCIESR GNDFLSHDNI  120
RFLAANATLI GTHIQFPSIG QNNPELISSS QQEKSSLRGL EVASFTCSSS SASSGPNVSS  180
KKRMRWNQEL HEKFINCVNN LGGAEKATPR TILKMMESKG LTIFQVKSHL QKYRAEKYMS  240
ERKQGKTETA SSDIPQLCMK NTMQIKETLK LQLNFQKHLN EQLEIQRHVQ QKIEENGKQL  300
KMMLQEQQKI NKRHIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-21181238259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28582.m000317
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530353.20.0uncharacterized protein LOC8263213
SwissprotQ0WVU35e-51PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLB9SWI40.0B9SWI4_RICCO; Transcription factor, putative
STRINGXP_002530353.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2696333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.15e-44G2-like family protein