PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28582.m000316
Common NameLOC8287222, RCOM_0277900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 424aa    MW: 47827.2 Da    PI: 8.0423
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28582.m000316genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.9e-32249303155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  28582.m000316 249 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 303
                    68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.789246306IPR017930Myb domain
SuperFamilySSF466892.87E-17247303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28247304IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23249304IPR006447Myb domain, plants
PfamPF002491.6E-8253302IPR001005SANT/Myb domain
PfamPF143791.0E-20334380IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNTSKIDFQG RIQQNHGMIG DLALHSFQSF GNQQTWNMGI RAQSPVMESA HLQQQNLRPD  60
KSSSSIMRSF ESPASAFYAT ERYMGFPQYD CQVNAVLSCP YSKSYDSQIP SQQSSGEIYV  120
IDAVNQQPDH NLELRNNLQS ITKSHLSDDH YYKSYKGVCS NSLGNKLHQL EQNKLSRNGA  180
VSVGNQFSIP FYGDQDHNNH NRFGSNPFVQ LGVSSRQEMQ SPRFSSGVVS VSSASSGNSM  240
ATGAVLSSKT RIRWTQDLHE KFVECVNRLG GADKATPKAI LKLMDSDGLT IFHVKSHLQK  300
YRIAKYMPDS SEGKAEKRTS INDVSQMDPK TGLQITEALQ LQLDVQRRLH EQLEIQKNLQ  360
LRIEEQGRQL KRMFDQQQRT NNNLFRNQNL DSISPDEQAF SLEDIEISFA EGSSNNSHFP  420
SKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-22249306158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-22249306158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-22249306158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-22249306158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22249306259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28582.m000316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530352.10.0myb family transcription factor PHL5 isoform X2
TrEMBLB9SWI30.0B9SWI3_RICCO; Transcription factor, putative
STRINGXP_002530352.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.13e-76G2-like family protein