PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28489.m000045
Common NameRCOM_0257880
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 1651aa    MW: 179696 Da    PI: 5.2959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28489.m000045genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07736777346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT eE e+++d  + +G++ + +Ia+ +  ++   +c+++++k
    28489.m000045 736 PWTSEEREIFIDKLAAFGKD-FQKIASFLD-HKKTADCVEFYYK 777
                      8*****************99.*********.77777******98 PP
2Myb_DNA-binding29.41.8e-09950989445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      WT eE   +++av  +G++ ++ I+r++  +R++ qck ++ 
    28489.m000045 950 WTDEEKSVFIRAVSSYGKD-FAMISRCVR-TRSRDQCKVFFS 989
                      *****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.88E-13720780IPR009057Homeodomain-like
PROSITE profilePS5129315.291732783IPR017884SANT domain
SMARTSM007171.1E-7733781IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-5736777IPR009057Homeodomain-like
PROSITE profilePS5129311.067945996IPR017884SANT domain
SMARTSM007171.2E-7946994IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-6949990IPR009057Homeodomain-like
SuperFamilySSF466895.54E-10949996IPR009057Homeodomain-like
CDDcd001678.73E-7950988No hitNo description
PfamPF002496.3E-7950989IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1651 aa     Download sequence    Send to blast
MPPERLPWDR KDLYKDRKYD RSTPRWRDTP SFSSGHYGSS RDFSRWGGGS NDFRRPSGHG  60
KQGGWHLFPE ESGHGGYLPF RSSERILEDK NCRPSVSRGD GKYGRNNRES RGSFGSQRDW  120
KNHSSWEVSN ESPNTPGRLH DVVNDQRSIE DIITYPSSLP RPEFANTWDQ LPLKDQHNNN  180
INNIINSNNK MAGANGLGTG QRGDREDSMD WKPFKWTRSG SLSSRGSGFS HSSSSKSLGG  240
ADSGEGKAEL QIKSASLVQS PSGDAIACVT SAPSEDMTAR KKPRLNWGEG LAKYEKKKVE  300
GPEVIGNKDG IVNSSSNAEP IHSQSSNLVD KSPRVMGLSD CASPATPSSV ACSSPGIEEK  360
TCGKGINAEN DVNNLCGSPS MGSQSHIEDI SFNLEVLDAT SIANLGSTLV ELLQYDDSSS  420
LDSSFVRSTL MNKLLILKGD ISKALEVTES EIDSLETELK SLKFKSGSRC TCPAASSSFP  480
VEGGAKLDGE QGATSNNIPR PSPLQVSCSG AENMEKTPCD GVMDEDHGGI KDDDVDSPGT  540
ATSKFVESLT VANAISSIDI VKSDECCGDM GGIQTMASQS FVPCTEEVDS DAPACRDVNS  600
LVEFKEGASF SSDASYAEDN LCSSILAANK ESASRASEIF DNLLPRDPCK LDXXRTSIRS  660
RFSSPVGNLS LVPTTEMLNF TSKLLSVSQV KAYRNALKMP ALILDKKERM ISRFISSNGL  720
VEDPWAVEKE RAMINPWTSE EREIFIDKLA AFGKDFQKIA SFLDHKKTAD CVEFYYKNHK  780
SDCFEKTKKS KQVKSCTNYL MASGKNWNRE MNAASLDILG AASVIAADAD NGMGNQQLCS  840
DRIYLAGYCD SKKLHCDDEN LDRSSKFDVL ENERETVAAD VLAGICGSMS SEAMSSCITT  900
SIEPGEGCRE WKSQKVDFAK KRPSASDVTQ IVDEETCSDE SCGEMDPADW TDEEKSVFIR  960
AVSSYGKDFA MISRCVRTRS RDQCKVFFSK ARKCLGLDSM HHTPGNVGTP VSDDANGGGS  1020
DTEDGCAFQT CSVICSDKPG AEVDEDLPFR VIDTQQESVA VERKSSTSDL VRYENSNVAG  1080
LIDQNDTIVD KAFISDACQM DCKSEVASAN DGKVVHGFAC QSDFSQAQEI SNESVSSEVE  1140
REKPVGGSMP VENAVKSGPS NPVDVEVKAI VEVSIHESRN QLQGKELLLH ENRLNSEMQH  1200
SSASRTVSHL PSDMGSSSNY CVGVENLHHV SVEFSSVEEP HIVSLQQENR MATATSLIQV  1260
SAANQCRKMH KKDSLSSQSV GRDDHFQLPG QALVNCIESQ QILGGYPVQI PMKREMNGDI  1320
SCRSHSEVQR GLTSESNGAN QFVAQDCYLQ KCNNTKIQCS VPELPLLPQH AEQCKDNSRS  1380
SSDTEKPSRN GDVKLFGKIL SNSSSQKMEN GDHGTHCPKL GNTSSTSKFS GHQTTDGSTS  1440
VLKFDHNNYL GLENVPVKSY GYWDGNKIQT GFPSIPPEYF LAKYPAAFSN YHISASKVEQ  1500
QAAGKCNDHS LNSVSVLPPR EISGSNGVVD YQMFRSNGSS KVQPFSVEMK QRQDMLSEIQ  1560
RISGFEGISS LQQQGRGMVG VNVVGRGGII VGGSCTGVSD PVAALKMHYA KSEQYSGQSG  1620
TIVREEESWR SSKGDIGSFA ITCSRSTKLL W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C8e-15692785294NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D8e-15692785294NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28489.m000045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015584009.10.0uncharacterized protein LOC8259383
TrEMBLB9T8C60.0B9T8C6_RICCO; Uncharacterized protein
STRINGXP_002534495.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-117MYB family protein