PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28460.m000086
Common NameRCOM_0252920
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 97aa    MW: 11045 Da    PI: 11.1657
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28460.m000086genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.23.1e-099514991
           FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                   +k++ +++ +r++C a+++  k+  g+w v+k++ +HnH+l+p
  28460.m000086  9 RKAKYEKSLKRIDCPARVNAIKKALGVWAVSKINRNHNHDLQP 51
                   466778999**********99999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-7851IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MTISCDRSRK AKYEKSLKRI DCPARVNAIK KALGVWAVSK INRNHNHDLQ PDMSILMAGH  60
RKISIHMKRQ LEVNDITSVR PGKNVKMLEI QAGGQRI
Cis-element ? help Back to Top
SourceLink
PlantRegMap28460.m000086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021648990.15e-32protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_021689758.14e-31protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLB9T7N06e-65B9T7N0_RICCO; Uncharacterized protein
STRINGXP_002534249.11e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-06FAR1 family protein