PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28455.m000362
Common NameRCOM_0251190
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 367aa    MW: 41415.5 Da    PI: 10.1435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28455.m000362genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31247305360
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                    D y+WrKYGqK++kgs++prsYY+C+s  gCp++k+ver+ +dp ++++tYeg+H h+k
  28455.m000362 247 DDYTWRKYGQKPIKGSPYPRSYYKCSSMrGCPARKHVERCLQDPAMLVVTYEGDHSHSK 305
                    99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-15194243IPR018872Zn-cluster domain
PROSITE profilePS5081129.356240306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-32240305IPR003657WRKY domain
SuperFamilySSF1182902.62E-26243304IPR003657WRKY domain
SMARTSM007742.3E-36245305IPR003657WRKY domain
PfamPF031064.1E-26247303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAPRGDFKVH EVAQSSFRQA HFLFTCISDK NQKRSIQEVS LIAQGAVNEF RNLLTLLDGS  60
TQSDHPKRIK KGPLPLSSVK INPVELMDSP NSMPLIMSSS GCNIRQFFPL QTIQSAGSVA  120
PTNSFNLYVQ KHKTKTNTDF RNSLVMNSSN PSPLKPIRTS FLSLDDRSGK SKRSVGYSSS  180
EIMASRDDFT MHSSKCKSEI KSEETNSTKC LASTGGCHCS KRRKMRIKKI IQVPATSSGK  240
LADIPPDDYT WRKYGQKPIK GSPYPRSYYK CSSMRGCPAR KHVERCLQDP AMLVVTYEGD  300
HSHSKIPLQS PNILIQIMES EHENVIPNFL CYKLRHVNKL VRNRDERPRP TDIFMLISAD  360
DLQFLNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-212413071075WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28455.m000362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581216.10.0probable WRKY transcription factor 21
TrEMBLB9SUX20.0B9SUX2_RICCO; WRKY transcription factor, putative
STRINGXP_002529783.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.15e-45WRKY DNA-binding protein 21